BAC Information

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BAC

Clone NameMSMg01-435L02
Chromosome12 (Build37)
Map Location 75,991,400 - 75,991,806
singlet/doubletsinglet
Overlap genenone
Upstream geneHif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
Downstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435L02.T7 (MSMg01no435_l02.b1)MSMg01-435L02.TJ (MSMg01no435_l02.g1)
ACCAG526938AG526939
length774769
length of high quality
(start - end)
407 (69 - 475)372 (78 - 449)
definitionCHROMAT_FILE: MSMg01no435_l02.b1 PHD_FILE: MSMg01no435_l02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:32 2005CHROMAT_FILE: MSMg01no435_l02.g1 PHD_FILE: MSMg01no435_l02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACACTGTTTCAGCCTGACCTTACGACCCTAGGAAGGTGTTTTTC
TCTCTAAAGTAGAGCTGTCTGTGTTAGAGTCTCCGCCTTACGGCTTTATT
GGTTATTAATCGGCTACTGCAATCCTATTTAAATTCTTATTTTATTCCTT
CATAGGAGTGCTGCGGAATAAAATATGATTATTTAAGTACATTGTTTAGT
ACTGCGAGTGCTCAATGACTATGAAGAGAGATGAAGCACACAGGTTGGAC
TGTCCAAATTCTCAATGGTCTTGACCCACACAAAGCTTGCAAATAACACT
AGCCTTGTATTAAGAGCAAGAGAGAGAAAAATCTTAATTTAGAGTATAGA
CTAGTATCTCAGGACATAGGACATGGGGTAGGTATTTTAAAAATTCTGAC
TTGCATACCTCTTCCTTACTCCATAGGACTCAGAATTTTATTGAGAATTC
ACTATAAACCACACCTTCTACTGTCCTGTAAAGAAGCACAGAATTACCTA
TTCCTCTCCCCCCAATTCCCTAATCCCCCCCCCCCTTCTTCGTTATTGAG
TTCACCTTGCCCCTCCGTATTCCCTTTATTATCCTCCCCACTCTCCCCCC
GACTTTTTTCTCCTCCCCTTTGCTTTTCCCCCTTTTTTCTCTTTTCCTCT
TCTCCTCCGTCCCCCCCCTGTTTTTTATTTTTTTCCCCCGTTTTTTTTTT
CTCTTTTTTTCCCCCCCTTCTCCC
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATGATCTTAATTAAGAAAATTCC
TCCCTAAGTCTTGTCTGTAGATAAGTCTTTTGTGCATTTTCTTAATATTG
ATGGGTCTATACCAGTGAGGGGTGGTGCTCCTCCTGGACAAGTTGTGTAG
TGTTGTCTAATGAAGCAGGTGGAATAATCCCTGAGGAGGAAGCCAATAAA
CAGTACACCTCCATTGCTTCTGCCTCTTGCCTCCAGGTATCCACCCCAAC
TTCTTTCAGTGACGAAGTATAACCCCAGAGACAGTTGTAAGATGAAATAA
TCCTTTCCTCCCCAAGTTGCTTTTGGTCATGGTGTTTTATCACAGTAATA
GGAGTCCTAACAAAGACACCCTCCCTTCTAAACTAACATATTGAGGAGTA
CGATATTGACTTGTGAGTTTTTATGATTTATCCACATTTATATTTATATC
CCACACATTTTTTGTCTATTATATCTGTCCTCCCGCTCTCTGTTTTTTTC
CCACAACTTTTATTATCTTGTCCTCCATCTTCCCTCTTTATATTTTTACT
TTTCTCATGTTTTCCGCCGGTTTAATCTTTTTTTTCTCGCATATGGTCTC
TCCCTTTCTCACCCCACTTATTCTTCCTCCTTTTTTTTCTCTTTTCTCTG
CTATCGCCATTGTGTACCGGTACTGTTCCGTTTCTTCTTTCCCCTGGTTC
GTAATTTCTTTTCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_l02.b1 MSMg01no435_l02.b1 CHROMAT_FILE:
MSMg01no435_l02.b1 PHD_FILE: MSMg01no435_l02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:32 2005
         (407 letters)



>mm_chr12_75991200_75992006
          Length = 807

 Score =  764 bits (395), Expect = 0.0
 Identities = 404/407 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgaccttacgaccctaggaaggtgtttttctctctaaagtagagctgtctgtgttaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgaccttacgaccctaggaaggtgtttttctctctaaagtagagctgtctgtgttaga 260

                                                                       
Query: 61  gtctccgccttacggctttattggttattaatcggctactgcaatcctatttaaattctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtctccgccttacggctttattggttattaatcggctactgcaatcctatttaaattctt 320

                                                                       
Query: 121 attttattccttcataggagtgctgcggaataaaatatgattatttaagtacattgttta 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 attttattccttcataggagtgctgcagaataaaatatgattatttaagtacattgttta 380

                                                                       
Query: 181 gtactgcgagtgctcaatgactatgaagagagatgaagcacacaggttggactgtccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtactgcgagtgctcaatgactatgaagagagatgaagcacacaggttggactgtccaaa 440

                                                                       
Query: 241 ttctcaatggtcttgacccacacaaagcttgcaaataacactagccttgtattaagagca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcaatggccttgacccacacaaagcttgcaaataacactagccttgtattaagagca 500

                                                                       
Query: 301 agagagagaaaaatcttaatttagagtatagactagtatctcaggacataggacatgggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agagagagaaaaatcttaatttagagtatagactagtatctcaggacataggacatgggg 560

                                                          
Query: 361 taggtattttaaaaattctgacttgcatacctcttccttactccata 407
           ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 taggtattttaaaaattctgatttgcatacctcttccttactccata 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 807
Length adjustment: 9
Effective length of query: 398
Effective length of database: 798
Effective search space:   317604
Effective search space used:   317604
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)