BAC Information

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BAC

Clone NameMSMg01-435N18
Chromosome12 (Build37)
Map Location 94,683,247 - 94,683,629
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream gene2610022K04Rik-ps, EG633639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435N18.T7 (MSMg01no435_n18.b1)MSMg01-435N18.TJ (MSMg01no435_n18.g1)
ACCAG527065AG527066
length784784
length of high quality
(start - end)		379 (67 - 445)383 (72 - 454)
definitionCHROMAT_FILE: MSMg01no435_n18.b1 PHD_FILE: MSMg01no435_n18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:46 2005CHROMAT_FILE: MSMg01no435_n18.g1 PHD_FILE: MSMg01no435_n18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCATTCATCTGCACTTCAACTGCACTCAACACAGTTGACAAACTCTTTCT
CCCTGTCCTCCTCTTTTAAGTTGCCTCTCTTTCCTGTTCTTTCTTTTTTT
TCCCTTTTCTTTTTTTTTATCACTTCTCTTTACTTTATTATCAGTGCTTA
AATTTGTTTACTTCTATTTACAATTGTATGCTTCTAGTTTTTTTTTATTA
CGTATTTTCCTCAATTACATTTCCAATGCTATCCCAAAAGCCCCCCCCCA
ACTCCCCTACCCACCCATTCCCATTTTTTGGCCCTGGCGTTCCCCTGTAC
TGGGACATATAAAGTTTGCCTATCCAATGGGCCTCTCTTTCCAGTGATAA
CTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAATAGCTCCGG
GGTACTGGTTAGTTCATAACGTTGCACCTACCGGGCTGCAGATCTCTTTA
CCTCCTCGTATACTTTTTCTAAATCCCCCACTGGGGGGCTTGTGATCCTC
CAATATTTTCTGGGAGACTTTCCCCCCTGTCCCCCTAATTCCCCCCCCCC
TTTTTTCTATTAATTCTTTACCCCTTCTCTCCCCTCTTCTCCCTTTTTTT
TCCTCCTCCTTTATCCCCCACTTTTTTTTTCCCCCCTTCCTTTTCCCCCT
TTTTTCCCTTTTCCTTCACCTCATCCCCCCCCTTTCTTTTTTCTTTTCCC
CCCTTTTCTTTTTCTTTTTTACCCCCTCTCTCCC

GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTCATGCACAGAGAGGAACACAACTCAC
ATGGGAACTGTGTGTAGAAGAACTCCCTGCAAATTGGGTGATAGCTTCTA
AAGTAAGTTTCTTTTGCTTTGTGACTTCATAAACCCTCCTGTATTTACAC
GGGGATGTAGCAAATTTGTGCTGGTTTGTCTCTCTATGGGCCACCTCTCT
TTCTGTACTGGCTAGTTTTGTGTCAATTTGACACAGGCTGGAGTTATCAC
AGAAAAAGGAGCTTCAGTTGGTGTGGAAAGCCGGTATGTGCTGCGAGCAA
TCGCGTGTGTGCCGCCAGTAATCTCTGAGGAGAGCCGTGTGTGCCTCGAG
CAATCGCCATTATAAGATGGCGCGGGCCTCCGCTGTGCCTAACTAGTAAA
CAAGCCTTGTACGCAGGTGCGAGAGTGAATTCACTTCCTAGTCATTCCCA
ATTTCGGGGTGTAATAGTTGACGCGATTTATCATCTATTGTCCACATGTT
GTCCTCTTCCCTTTTTATTTTCCTCACCACCTTCTTATTCTCTTTACTTC
TTTGCCCCTCCCCTTTTCATTTTTCTTTTTCTATACTTACTGAACATTCT
TATTTTATTTTTCGCCTGATACACCCCTTCTAATCCCCGTTCTATTCACA
TCCCCTTTTAATTCTTCTCTTTTTAACCACTTGTATCATTTATTTTCTAT
TTTTTATCTCCCTAGTCTCTTATCTTATTCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_n18.g1 MSMg01no435_n18.g1 CHROMAT_FILE:
MSMg01no435_n18.g1 PHD_FILE: MSMg01no435_n18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:46 2005
         (383 letters)



>mm_chr12_94683047_94683829
          Length = 783

 Score =  696 bits (360), Expect = 0.0
 Identities = 378/384 (98%), Gaps = 2/384 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtcatgcacagagaggaacacaactcacatgggaactgtgtgtagaagaactccctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtcatgcacagagaggaacacaactcacatgggaactgtgtgtagaagaactccctgca 260

                                                                       
Query: 61  aattgggtgatagcttctaaagtaagtttcttttgctttgtgacttcataaaccctcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattgggtgatagcttctaaagtaagtttcttttgctttgtgacttcataaaccctcctg 320

                                                                       
Query: 121 tatttacacggggatgtagcaaatttgtgctggtttgtctctctatgggccacctctctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttacacggggatgtagcaaatttgtgctggtttgtctctctatgggccacctctctt 380

                                                                       
Query: 181 tctgtactggctagttttgtgtcaatttgacacaggctggagttatcacagaaaaaggag 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgtactggctagttttgtgtcaacttgacacaggctggagttatcacagaaaaaggag 440

                                                                       
Query: 241 cttcagttggtgtggaaagccggtatgtgctgcgagcaatcgcgtgtgtgccgccagtaa 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcagttggtgtggaaagccggtacgtgctgcgagcaatcgcgtgtgtgccgccagtaa 500

                                                                       
Query: 301 tctctgaggagagccgtgtgtgcct-cgagcaatcgccattataagatggcgcgggcctc 359
           ||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||
Sbjct: 501 tctctgaggagagccgtgtgtgc-tgcgagcaatcgccattataaaatggtgcgggcctc 559

                                   
Query: 360 cgctgtgcctaactagtaaacaag 383
           ||||||||||||||||||||||||
Sbjct: 560 cgctgtgcctaactagtaaacaag 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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