BAC Information

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BAC

Clone NameMSMg01-436K17
Chromosome12 (Build37)
Map Location 61,513,951 - 61,514,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665644, EG622488
Downstream geneLOC665665, Ppia-ps12_475.1, LOC100040300, LOC665677
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436K17.T7 (MSMg01no436_k17.b1)MSMg01-436K17.TJ (MSMg01no436_k17.g1)
ACCAG527681AG527682
length748748
length of high quality
(start - end)
556 (82 - 637)382 (78 - 459)
definitionCHROMAT_FILE: MSMg01no436_k17.b1 PHD_FILE: MSMg01no436_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:48 2005CHROMAT_FILE: MSMg01no436_k17.g1 PHD_FILE: MSMg01no436_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAATACCATTACCTGTTTTTAAAAGCCAAGTGTGTTTGTATGGTG
ACATATGCTTACAATGCTAGTACTGAGGAGACAGAGACAGATGTATTTCT
GATACTTACTCATCAACCAGCTAGCCTTCTTGTGCAAGTCTAATCTAATA
GAAGACTTTGCCCCCCAAAATTATTGATGGCTCTTGAAAAATGACACCTG
AGACTTACCTCTTGCCTCTGTATGCATTTGCACAGGTGTGTACATACTTA
GGCAAACATACATATCAACATGTACATTAAGTTATGGTCATTAGACTGTT
ATGTACAGTATGACAGCCTCTTACAATAAGTCTCCTTGAATATTTACAGT
GAAGTGTTTATTATAGCCAAGATTTCTATGATAGGAATGTGGAAAGAAGT
TTGTGTTATGCAGATTGAGGAAATAGTGTGCTTTTGGAGCATTTGTACAA
AGATATCTGATGAAATTGGTCTCATCATTTTAAAAATTGATGATATGCAG
CAAGAAAACCTGGTGGAATAGGGAGGTAGGACACAGCTAAGTTAGTACTT
CACTTTGCCTGTTCTTACAAATTAAATGCATACACACACACACACATACA
CACTTACTCTCTCACATTCTCACATTTTTACATACTATTTTTTTATGATA
CTCAATTATTCAATTAGATTTTTATTATAGAATAATTCTTAGAATTTT
NCCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATCCCAGATAAATAGATGGAA
AAAATAATCAAAAGCAGAAATCAATGAAATAGAAACAAACAAACAAACTG
AAAAGATACAACAAATCAAGGGAGCAATGCATTGATTCTTTGAGAAAATC
AGGATGATTGCCAGTCCCTAAACTAACTTAAGTAAAAGGCAGAAACAAAA
AACCCAAAATAACAATAAATTAGTAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAGAATAAGCCTGTTAGTGATGGTGCTTGCCTTTAAT
CCCAGCACTTGGGTGGCAGAGGCAGGCAGATTTCTGATTTTGAGGCGACC
CTGGTCTATAGAGTGAGTTCCAGGAAAGTCAGGGATGCACAGAGAAAACC
TGTCTAGAACAAACAAAACAATAATTAAATAAATAACAATAAAAAATAAA
AATGAAAGAAAACAAAATATGTACATAACAACCAATATTGAGCAAATCTA
GAGACTCTTAAGGACATACATTAACAACCTGTACTCTAAGATATTAGAAA
ATCTAAAATAAATGGATAGTTTTTAATATAGGCAAAACTTCCCAAATTTT
GATCGACATAACACTAGCACTTAAAAATTCACTTATAAGCACTAATGATC
AAGGCGGAGTATTTCAAAGGCCTCCAGTTAAAACCTTCCAGGTATCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_k17.b1 MSMg01no436_k17.b1 CHROMAT_FILE:
MSMg01no436_k17.b1 PHD_FILE: MSMg01no436_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:48 2005
         (556 letters)



>mm_chr12_61513751_61514705
          Length = 955

 Score = 1027 bits (531), Expect = 0.0
 Identities = 550/557 (98%), Gaps = 3/557 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagtgtgtttgtatggtgacatatgcttacaatgctagtactgaggagacagagacaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagtgtgtttgtatggtgacatatgcttacaatgctagtactgaggagacagagacaga 260

                                                                       
Query: 61  tgtatttctgatacttactcatcaaccagctagccttcttgtgcaagtctaatctaatag 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 tgtatttctgatacttactcatcaaccagatagccttcttgtgcaagtctaatctaatag 320

                                                                       
Query: 121 aagactttg-ccccccaaaattattgatggctcttgaaaaatgacacctgagacttacct 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagactttgtccccccaaaattattgatggctcttgaaaaatgacacctgagacttacct 380

                                                                       
Query: 180 cttgcctctgtatgcatttgcacaggtgtgtacatacttaggcaaacatacatatcaaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgcctctgtatgcatttgcacaggtgtgtacatacttaggcaaacatacatatcaaca 440

                                                                       
Query: 240 tgtacattaagttatggtcattagactgttatgtacagtatgacagcctcttacaataag 299
           || |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggacatt--gttatggtcattagactgttatgtacagtatgacagcctcttacaataag 498

                                                                       
Query: 300 tctccttgaatatttacagtgaagtgtttattatagccaagatttctatgataggaatgt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tctccttgaatatttacagtgaagtgtttattatagccaagatttctatgataggaatgt 558

                                                                       
Query: 360 ggaaagaagtttgtgttatgcagattgaggaaatagtgtgcttttggagcatttgtacaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ggaaagaagtttgtgttatgcagattgaggaaatagtgtgcttttggagcatttgtacaa 618

                                                                       
Query: 420 agatatctgatgaaattggtctcatcattttaaaaattgatgatatgcagcaagaaaacc 479
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 619 agatatctgatgaaattggtctcatcaggttaaaaattgatgatatgcagcaagaaaacc 678

                                                                       
Query: 480 tggtggaatagggaggtaggacacagctaagttagtacttcactttgcctgttcttacaa 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tggtggaatagggaggtaggacacagctaagttagtacttcactttgcctgttcttacaa 738

                            
Query: 540 attaaatgcatacacac 556
           |||||||||||||||||
Sbjct: 739 attaaatgcatacacac 755


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space:   515970
Effective search space used:   515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)