Query= MSMg01no436_o21.b1 MSMg01no436_o21.b1 CHROMAT_FILE:
MSMg01no436_o21.b1 PHD_FILE: MSMg01no436_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:08 2005
(278 letters)
>mm_chr12_89360594_89361270
Length = 677
Score = 455 bits (235), Expect = e-132
Identities = 263/273 (96%), Gaps = 5/273 (1%)
Strand = Plus / Plus
Query: 5 gaattcattattttatac-ctatcctcagtagcctcttttgtctctcattaccatagaaa 63
||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattatttta-acattgtcctcagtagcctcttttgtctctcattaccatagaaa 263
Query: 64 accagaatgcagtaaaagggtccatttgtttgtttggttggtgtggtgattgaattatgc 123
| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 264 a-cagaatgcagtaaaagggtccacttgtttgtttgtttggtgtggtgattgaattatgc 322
Query: 124 ttggagcagggtgtggtatatctggaagtgtggccttgttggattacagttgcatctctg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttggagcagggtgtggtatatctggaagtgtggccttgttggattacagttgcatctctg 382
Query: 184 tggaggctgggctttggggaaatatatatatatactcaagctctgcccagggtgagacat 243
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 383 tggaggctgggctttggggaaatatatatata--ctcaagctctgcccagggtgagacat 440
Query: 244 agtagtctcatcttgatgccttcaacttttgag 276
|||||||||||||| ||||||||||||||||||
Sbjct: 441 agtagtctcatcttcatgccttcaacttttgag 473
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 677
Length adjustment: 9
Effective length of query: 269
Effective length of database: 668
Effective search space: 179692
Effective search space used: 179692
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no436_o21.g1 MSMg01no436_o21.g1 CHROMAT_FILE:
MSMg01no436_o21.g1 PHD_FILE: MSMg01no436_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:08 2005
(612 letters)
>mm_chr12_89097134_89098145
Length = 1012
Score = 1122 bits (580), Expect = 0.0
Identities = 604/612 (98%)
Strand = Plus / Plus
Query: 1 tgtgttcaaggatataacaaaataagggagtggtattttgaggcaagatcctacccagct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tgtgttcaaggatataacaaaataagggagtggtattttgaggcaagatcctacccagtt 260
Query: 61 aaatttagatccaggaatagtggtgtacacctttaatccctggacataaagccaagccga 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 261 aaatttagatccaggaatagtggtgtgcacctttaatccctggacataaagccaaaccga 320
Query: 121 cctctgagttcaagactagcccaggacacagcaaattctaggtgaagaaaatcttgtttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctctgagttcaagactagcccaggacacagcaaattctaggtgaagaaaatcttgtttg 380
Query: 181 tttgtttgtttgtttgtttcttgagacagggtttccctgtgtagccctggctgtcctgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtttgtttgtttgtttcttgagacagggtttccctgtgtagccctggctgtcctgga 440
Query: 241 actcactctgtatgacaggctggccttgaactcagaaatccacctgcctctgcctcccag 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actcactctgtaggacaggctggccttgaactcagaaatccacctgcctctgcctcccag 500
Query: 301 gtgctgggatcaaaggcgtgtgccactacacccagctgaaaatcttaaatccaggcatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgctgggatcaaaggcgtgtgccactacacccagctgaaaatcttaaatccaggcatgg 560
Query: 361 tggtatacaccttttatcccaggagacaggcatgcacatctctgagaagagcctcaacag 420
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 561 tggtatacaccttttatcccaggagacaggcatgcagatctctgagaagagccacaacag 620
Query: 421 ccaagtttaggcagtgaaggagttggaaaagaagctggagataatattctaagacaagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagtttaggcagtgaaggagttggaaaagaagctggagataatattctaagacaagtg 680
Query: 481 ggtgttttccagtggggaaccctcacacctttttgctgtttttggagtccaccaaaagac 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 681 ggtgttttccagtggggaaccctcacacctttttgctgttgttggagtccaccaaaagac 740
Query: 541 cctcactcacaaagaccacagagactctacattagggaaaaagaatcatctttctaacgt 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 741 cctcactcacaaagaccacagagactctacattaaggaaaaagaatcatctttctaacgt 800
Query: 601 ctctttgtcctc 612
||||||||||||
Sbjct: 801 ctctttgtcctc 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
