BAC Information

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BAC

Clone NameMSMg01-439A06
Chromosome12 (Build37)
Map Location 90,379,968 - 90,531,548
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439A06.T7 (MSMg01no439_a06.b1)MSMg01-439A06.TJ (MSMg01no439_a06.g1)
ACCAG529473AG529474
length721720
length of high quality
(start - end)
531 (47 - 577)293 (76 - 368)
definitionCHROMAT_FILE: MSMg01no439_a06.b1 PHD_FILE: MSMg01no439_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:00 2005CHROMAT_FILE: MSMg01no439_a06.g1 PHD_FILE: MSMg01no439_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,531,014 - 90,531,548)(90,379,968 - 90,380,260)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCATATTTCGATCAGATACAATTTAATGAGAGTGATAGAAAAG
ATGCACAAAGCTTCTCCCTACATCCTCCCTAAAATGTGCATTTTCTTCAT
TCATACAAGGAGAATACAGGTGTTGCCTGATATATTAAAATGAACATGAA
AGAATGTGAATAAGAATGATCATCAATACAGATCATCAATACAGATCATT
AATACAGATCATCAATGGAGATCATTGATGCAGAATAAGGACTGGATCCA
AGCTGGAATGACAGAAAGCCCTTCCACGAGTAAAACCTTTGGATGACGTC
ATGAGGGATGGGGAGACACATCAGCATAGGAAGGAAAAGCTGAGGAGGCA
GAGAAGATCATTAAGGAGAGAGGCAACCCTCACTTTAAGAGAAGATGCTT
GTGTCAGAAGGGTGAACTTCATGTTTCAGAGCAATCAGCTAGTAGAAGTA
TAATAAAGGATTAGTATAAAATAGCTTAGTTTTCAAATTAGGGTTGTGTC
TTGATATATTCTACAGAACTTATGAAAATGAAACAAACAAACAATTCCTG
ATTGTGGAGATGGAAGTAGGAGAAGGCAAAAGGAGATGATGAGCCTCCAG
TTCTGGAAAGTGGAGGAGAGAGAATCAACTGGAAACTGAGACCCAGCTAA
ACACCCAGCGAACTGGCTGAA
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTATTAACTTAGAACAAAATCTTT
CTGAGTGTCATGAGATCCAGCCCTTCTGATAGTATGTGGGAAAGGCAAGA
ACAACCTGCCTTCTGATAGGGCTGCTAATTCAGCTGCCAATGGGCTTTGT
GAGATCCTCTTTATTCTGTTTTGTTGTTGATGTTTTGTTTTGTGTTGTTT
TGTTTTAATTGAAGCCTAGAGGAGTTCAGATGCTTACTGGGCAGAGGGAA
TGGGTACTTCGATTATTTTTGTAGTTGTCTCAATGTGGGAATGCCCAAAG
AAACCTCATTAGCCCTCAAAATTGTTCATCCTGAGAAACTTCTAATACTC
CCCTTACTAGTCAAGTTTTGAAGGACAACAGCAGAGATCCACACCCCAAG
TACTGACATTACTCTTCTCATATAAATCCTTAAAATATGGCCGTACTGCC
AATCCGAGGCTAAAATATCAACTCCTATCCTTCACACCTCCCCCGAGTCA
CTGAATGACCCTGCTCACAATACTGTTTCTTAATATCCCACGTCACCTCG
TACCCCCCACTTCCTCTGCCCCCTTTTCTACCCCTCATGCCCCATGCTTT
GTTTCCCCCTCCATTTCCTCTCTTCTTCCTCCTTTTTCTCCCCCCCGCTT
CCGCTTTCCTTTTTTCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_a06.b1 MSMg01no439_a06.b1 CHROMAT_FILE:
MSMg01no439_a06.b1 PHD_FILE: MSMg01no439_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:00 2005
         (531 letters)



>mm_chr12_90530840_90531770
          Length = 931

 Score =  932 bits (482), Expect = 0.0
 Identities = 519/536 (96%), Gaps = 10/536 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatat-ttcgatcagatacaatttaatgagagtgatagaaaagatgcacaaa 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattcagcatatgtt-gatcagatacaatttaatgagagtgatagaaaagatgcacaaa 651

                                                                       
Query: 64  gcttctccctacatcctccctaaaatgtgcattttcttcattcatacaaggagaatacag 123
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 650 gcttctccctacatcctccctaaaatgtgcattttcttcaatcatacaaggagaatacag 591

                                                                       
Query: 124 gtgttgcctgatatattaaaatgaacatgaaagaatgtgaataagaatgatcatcaatac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gtgttgcctgatatattaaaatgaacatgaaagaatgtgaataagaatgatcatcaatac 531

                                                                       
Query: 184 agatcatcaatacagatcattaatacagatcatcaatggagatcattgatgcagaataag 243
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 530 agatcatcaatacagatcattaatacagatcatcaatggagatcatcgatgcagaataag 471

                                                                       
Query: 244 gactggatccaagctggaatgacagaaagcccttccacgagtaaaacctttggatgacgt 303
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 470 gactggatccaagctggaatgacagaaagcccttccatgagtaaaacctttggatgacat 411

                                                                       
Query: 304 catgagggatggggagacacatcagcataggaaggaaaagctgaggaggcagagaagatc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 catgagggatggggagacacatcagcataggaaggaaaagctgaggaggcagagaagatc 351

                                                                       
Query: 364 attaaggagagaggcaaccctcactttaagagaagatgcttgtgtcagaagggtgaactt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 attaaggagagaggcaaccctcactttaagagaagatgcttgtgtcagaagggtgaactt 291

                                                                       
Query: 424 catgtttcagagcaatcagctagtagaagtataataaaggattagtataaaatagcttag 483
           || |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 290 caagtttcagagcaatcagctagtagaagtataatgaaggattagtataaaatagattag 231

                                                                   
Query: 484 ttttcaaattagggttgtgtcttgat--------atattctacagaacttatgaaa 531
           ||||||||||||||||||||||||||        ||||||||||||||||||||||
Sbjct: 230 ttttcaaattagggttgtgtcttgatgcaatggcatattctacagaacttatgaaa 175


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no439_a06.g1 MSMg01no439_a06.g1 CHROMAT_FILE:
MSMg01no439_a06.g1 PHD_FILE: MSMg01no439_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:00 2005
         (293 letters)



>mm_chr12_90379768_90380460
          Length = 693

 Score =  497 bits (257), Expect = e-145
 Identities = 284/297 (95%), Gaps = 8/297 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtattaacttagaacaaaatctttctgagtgtcatgagatccagcccttctgatagtat 60
           |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 agtattaacttaaaacaaaatctttttgagtgtcatgagatccagcccttctgatagtat 260

                                                                       
Query: 61  gtgggaaaggcaagaacaacctgccttctgatagggctgctaattcagctgccaatgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgggaaaggcaagaacaacctgccttctgatagggctgctaattcagctgccaatgggc 320

                                                                       
Query: 121 tttgtgagatcctctttattctgttttgttgttgatgttttgttttgtgttgttttgttt 180
           |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 321 tttgtgagatcctctttattctgttttgttgttgatgtttcgttttgtattgttttgttt 380

                                                                       
Query: 181 taattgaagcctagaggagttcagatgcttactgggcagagggaatgggtacttcgatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 taattgaagcctagaggagttcagatgcttactgggcagagggaatgggtacttcaatta 440

                                                                    
Query: 241 ----tttttgtagttgtctcaatgtgggaatgcccaaagaaacctcattagccctca 293
               |    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggact----gtagttgtctcaatgtgggaatgcccaaagaaacctcattagccctca 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)