BAC Information

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BAC

Clone NameMSMg01-439H09
Chromosome12 (Build37)
Map Location 40,313,774 - 40,314,215
singlet/doubletsinglet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439H09.T7 (MSMg01no439_h09.b1)MSMg01-439H09.TJ (MSMg01no439_h09.g1)
ACCAG529809AG529810
length747717
length of high quality
(start - end)
512 (46 - 557)235 (75 - 309)
definitionCHROMAT_FILE: MSMg01no439_h09.b1 PHD_FILE: MSMg01no439_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:35 2005CHROMAT_FILE: MSMg01no439_h09.g1 PHD_FILE: MSMg01no439_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATGCCTACTCAAACATAACATACCACAAACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACGGAAAGGAGAAAAAGAAAATAGAATAAGGAAAGAAGAGAAAGAAAA
CAAATTCAGAGCAGGCAGCGCCTGGGTGCAGTTCTGCATCTTCCTCAAAG
CCCCCTCCTTACAGAATTCATTTACTTGAGCGGCTGGGCAGCTTCTAAAG
AGGATTCCTGGGAAAGATCTTAATGTGTAATGGAATCTGCGAACCAGTGT
TGCTAGGGACTCCACTTAGTGAGCTTGGCAGGAAGGAAAATCAAACCATT
TAGCACGTTTTCCCTCAGAATCCATCTATAAATACCCACTCTGTTCCATT
CTTTGCCCTAGAAGCTCTTTTCTGTTCTACACAGAGATGCGGCTGTGCAT
TCTCTTTTGTGAGCAATGGCTCTATCTGATTTTATAAATACCATTTTACA
CTAATAGAACTCTCAAGAGGATTTGGAACCATTAAGAATGGTGCATTTAT
AAGTCTCATTGTACCCCTACCATGGTCTCTGGAACAAATACAGGGTTAAA
CACTTAAAATTATACTTTGAGAGGATTTTCTGAGAACTTTTAAAAGAAGG
CGTTGAAGATATTTTTGAAAATAAATTAGGAAGAACGGCCCGGACAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATG
AATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCAAGAAT
TTTATTGAGTATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGT
TCTCTATCTTTGTTGGGTCTTTCTGTGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAA
TAGTTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGGTAGAACT
CTGCACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTA
ATAACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGAAGGTCAAC
TTGATCCTGATTCCACTTTGGTACCCGGTATTTGTTTTTAAACTTGTCCA
CTTCGTCCACGCCTTTTCGTCCTTTTTTATCCTACACTTTTTTCTCAACT
ATTTTAAGCCGCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_h09.b1 MSMg01no439_h09.b1 CHROMAT_FILE:
MSMg01no439_h09.b1 PHD_FILE: MSMg01no439_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:35 2005
         (512 letters)



>mm_chr12_40313415_40314326
          Length = 912

 Score =  824 bits (426), Expect = 0.0
 Identities = 438/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 71  cacacacacacacacacacacacacacacacacacacacggaaaggagaaaaagaaaata 130
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 801 cacacacacacacacacacacacacacacacacacacatggaaaggagaaaaagaaaata 742

                                                                       
Query: 131 gaataaggaaagaagagaaagaaaacaaattcagagcaggcagcgcctgggtgcagttct 190
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 gaataaggaaagaagagaaagaaaacaaattcagagcaggcagtgcctgggtgcagttct 682

                                                                       
Query: 191 gcatcttcctcaaagccccctccttacagaattcatttacttgagcggctgggcagcttc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 gcatcttcctcaaagccccctccttacagaattcatttacttgagcggctggggagcttc 622

                                                                       
Query: 251 taaagaggattcctgggaaagatcttaatgtgtaatggaatctgcgaaccagtgttgcta 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaagaggattcctgggaaagatcttaatgtgtaatggaatctgcgaaccagtgttgcta 562

                                                                       
Query: 311 gggactccacttagtgagcttggcaggaaggaaaatcaaaccatttagcacgttttccct 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggactccacttagtgagcttggcaggaaggaaaatcaaaccatttagcacgttttccct 502

                                                                       
Query: 371 cagaatccatctataaatacccactctgttccattctttgccctagaagctcttttctgt 430
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagaatccatctataaatacccactctgttccattctttgccctagaagctcttttctgt 442

                                                                       
Query: 431 tctacacagagatgcggctgtgcattctcttttgtgagcaatggctctatctgattttat 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctacacagagatgcggctgtgcattctcttttgtgagcaatggctctatctgattttat 382

                                 
Query: 491 aaataccattttacactaatag 512
           ||||||||||||||||||||||
Sbjct: 381 aaataccattttacactaatag 360


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 27
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)