XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTC
TAAGTAATCTCCATGGAATCTTGGAGGATTTATGACTTGAGACTTTGAAG
ACTAATTTTCTCTTGGTACTGCATCATTGCAGTGATAACTGGATCTATGT
GGGACTTTGGAGAGCCCACACAGAGGAATCTTGTCTTTTATATTGTGCTC
ACTTACGAAGTGTCTTCCCTGTGCAGACTTTACAACTGGTGATGTTTCAA
AACCAGTATTGTTTTTAAAGAAAATTAAAACCACTACAAGTTACAGAGAC
AGCTGCGGAAGACAGGTATCAGTACATTTGCCATCGGCGTCTGTCCTGCT
TTTTACTCTTTGCATTGTCTTCTGTGAGATGGCAACGGGTGTGAACAGAG
CCTCCAGCACACACCGCAGAACTGTCTCTGCTCCCTCTTTTTTAAGGCTT
CCAACTCGGGAGCATGCAGGCTCACTGGAAAGGGGCATCCCAGCCCCGAG
GTCAAGCCTGTGAGGAAGCCAGAACACAGGCAGTGCTGAGCAAGGGTGGC
CACTGCAAGGAGCTGGCCATCTCCTGGCTTGGAAGGCTACCTCTGTATGC
CTTTCCCGAGCCCATGGCACCTGGTGTGTTCCCGCCTTTACTGCCATAAG
GGTCCGGTCTCTTTCCCTCCCAAAAGTCGTACACTCCTCTACATCCCTCC
CCAAGCGACATTGTTTTTGTTTGCTCCCCTCCTTTTCCTCCCTCTTTTCC
CTTCTTTTCCCTTTCT

TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGGATTTCTAAGCTAAGTAGTTATAAGCTGTTC
AATGTGGGTGTTGTGATCTGAATTTGGATCTTCTGAAAACTTTTTTTGTT
TTTGTTTTCGCTTTTAGCTTTTTTGAGATAGGGTTTCTCTGTGTAGCTCT
GACTGTCCTGGAACTTGTTCTATAGACCAGGCTGGCCTTGAACTCAGTGG
TCCATCTGCCTTTGCCTCCTGAATGCTGGGATTATAGGCACATACCACCA
TGCCCAGCTATTTTGTTTGCATTTTACACCACACTTGACATTGTTTTATT
TTTTAGAACTGTATCTGTCTCTGTGTACTATCACGAAAGTACAGAATGTA
ATACGTCTGGCTCCATCCCAGTTCTTAATGTCCTTTTCACCCTATTTGTT
TTTATCATTTACCTATATTCTGTTCCCCCTCCCGATTTCTCCCCTTTTTT
CCCCTTTCCTCTTTTCCTCTTCCCATCCCCTGCCTGTTGCTTTTTCTTCA
TGTTTTACCCTTGCCATTTTGTTCCTTGCCCTTTTTTATTTATTTTACCT
TTTTTTCCCTCTATTTCTCCTCTCTCCCCCCCTCTCTTCTTACCTTTCTT
TTTTTTTTTCTACCACTTTTCCACTTTTTCCCCCCCCATTTTTCCTCCTT
TTTTTTCTACCCTCCCTTTTTCTTCCTTCCACTTTCTTTACTCCATCCCC
CCCCN

Query= MSMg01no439_l15.b1 MSMg01no439_l15.b1 CHROMAT_FILE:
MSMg01no439_l15.b1 PHD_FILE: MSMg01no439_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:56 2005
         (485 letters)



>mm_chr12_5373815_5374699
          Length = 885

 Score =  890 bits (460), Expect = 0.0
 Identities = 475/480 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattctaagtaatctccatggaatcttggaggatttatgacttgagactttgaagacta 65
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gaattctaagtaatctaaatggaatcttggaggatttatgacttgagactttgaagacta 626

                                                                       
Query: 66  attttctcttggtactgcatcattgcagtgataactggatctatgtgggactttggagag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 attttctcttggtactgcatcattgcagtgataactggatctatgtgggactttggagag 566

                                                                       
Query: 126 cccacacagaggaatcttgtcttttatattgtgctcacttacgaagtgtcttccctgtgc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccacacagaggaatcttgtcttttatattgtgctcacttacgaagtgtcttccctgtgc 506

                                                                       
Query: 186 agactttacaactggtgatgtttcaaaaccagtattgtttttaaagaaaattaaaaccac 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agactttacaactggtgatgtttcaaaaccagtattgtttttaaagaaaattaaaaccac 446

                                                                       
Query: 246 tacaagttacagagacagctgcggaagacaggtatcagtacatttgccatcggcgtctgt 305
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 445 tacaagttacagagacagccgcggaagacaggtagcagtacatttgccatcggcgtctgt 386

                                                                       
Query: 306 cctgctttttactctttgcattgtcttctgtgagatggcaacgggtgtgaacagagcctc 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgctttttactctttgcattgtcttctgtgagatggcaacgggtgtgaacagagcctc 326

                                                                       
Query: 366 cagcacacaccgcagaactgtctctgctccctcttttttaaggcttccaactcgggagca 425
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagcacacagcgcagaactgtctctgctccctcttttttaaggcttccaactcgggagca 266

                                                                       
Query: 426 tgcaggctcactggaaaggggcatcccagccccgaggtcaagcctgtgaggaagccagaa 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcaggctcactggaaaggggcatcccagccccgaggtcaagcctgtgaggaagccagaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space:   415625
Effective search space used:   415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)