BAC Information

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BAC

Clone NameMSMg01-439N06
Chromosome12 (Build37)
Map Location 65,419,294 - 65,419,495
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302
Downstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439N06.T7 (MSMg01no439_n06.b1)MSMg01-439N06.TJ (MSMg01no439_n06.g1)
ACCAG530088AG530089
length745788
length of high quality
(start - end)
476 (45 - 520)201 (76 - 276)
definitionCHROMAT_FILE: MSMg01no439_n06.b1 PHD_FILE: MSMg01no439_n06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:03 2005CHROMAT_FILE: MSMg01no439_n06.g1 PHD_FILE: MSMg01no439_n06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCACCTGAGAATACCGAATGGCTAAGAAGCACCTGAAAAAATGTTC
AGTGTCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGTTCAAAAATTCATGTGACAGCAGA
TGCTGGCTAGGATGTGGAGAAAGAGGAGCATTCCTCCATTGCTGGTGGGA
TTGCAAGCCTATACAACCACTCTGTAAATCAGTCTGTTGGTTCCTCAGAA
AATTGGACATAGTTCTACCAGAGGATCCCACATTACCTCTCCTGGGCATA
TATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTATGTT
CATAGTAGCATTATTTATAATAGCCAGAATCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAACTGTGATACATTTACACAATGGAG
TACTACTCAGCTATTTTAAAGAATGAATTTATGAAATTCCTAGGCCAATG
GATGGAACTGGAGGGCATCTTTCCGAGTGAAGGAACTCAATCCCCAAAGA
ACCCCCTGGAATGTACTCCCTGATAAGGGGAATTAACACCAAAACTTCAA
TGGCCCCTAAAAAAAAAAATGGACGGCCGGGTAATGGTGGCCCCACCCCT
AATTTTCCCAACTATCCTGTTTTGTTAAAAAAAAAAAAAAAAAAG
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGGATAGTGTATTTTTTCTTTTA
TAAAATACATCATATGACAAAGTACAAAGAAAGTGACTCATACCATCCAG
CCACTAAGCTAAGCTTTATTTACAGACTAACCTGAAGGTTGAAAGCCAGA
GTTTCCTGGGCATTTGAGAGAGAGAGAAAGAGACAGAGAAAAAGAGACAA
AGACAGGAGGAGGGGGAGGGGGAGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTTTTTTTTNNNNNNNNNNNNNNNNNNTTNTNNN
NNTNNNTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTNNTTTTN
TTTTTTNNTTTTTTTTTNNTTTTTTTTGTTTTTTTTTTNTTTTTTTTTTT
TNTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNTT
TTTTTTTTTTTTTTTTTTTTTTNTTNTTTTTTTNTTTTTTTTTTNTTNNT
NNNTTTTTTTTTTTTTTTTNNNNNTTTTTTTTTTTTTTTTTTTTTNTTTN
TTTTTTTTTTTTTTTNTTTNTTTTTTTTTNNTTNTTTTTTTTTTTTTNNT
TTTTTTTTTTTTNTTTTTNTTNTTTTTTTTTTTTTTTTTTTNNNTTNNTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTGTTTTTNNNNTNNNNTCTNT
TTTTTTTTTNTTTTTTTTTTTTTTTCCTCTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_n06.g1 MSMg01no439_n06.g1 CHROMAT_FILE:
MSMg01no439_n06.g1 PHD_FILE: MSMg01no439_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:03 2005
         (201 letters)



>mm_chr12_65419094_65419694
          Length = 601

 Score =  379 bits (196), Expect = e-110
 Identities = 200/202 (99%), Gaps = 2/202 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggatagtgtattttttcttttataaaatacatcatatgacaaagtacaaagaaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggatagtgtattttttcttttataaaatacatcatatgacaaagtacaaagaaagtg 260

                                                                       
Query: 61  actcataccatccagccactaagctaagctttatttacagactaacctgaaggttgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcataccatccagccactaagctaagctttatttacagactaacctgaaggttgaaag 320

                                                                       
Query: 121 ccagagtttcctgggcatttgagagagagaga--aagagacagagaaaaagagacaaaga 178
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 321 ccagagtttcctgggcatttgagagagagagagaaagagacagagaaaaagagacaaaga 380

                                 
Query: 179 caggaggagggggagggggagg 200
           ||||||||||||||||||||||
Sbjct: 381 caggaggagggggagggggagg 402


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)