Query= MSMg01no439_n15.b1 MSMg01no439_n15.b1 CHROMAT_FILE:
MSMg01no439_n15.b1 PHD_FILE: MSMg01no439_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:05 2005
(286 letters)
>mm_chr12_86937731_86938416
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%)
Strand = Plus / Plus
Query: 1 tataaccggcctggctggattcagggactgtgtcaccattattccattggtgtcttgatt 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tataaccggcctggctagattcagggactgtgtcaccattattccattggtgtcttgatt 260
Query: 61 tctctctatttttatttgcattaatattattatcagtaaacatctttgctcaggtggcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctctatttttatttgcattaatattattatcagtaaacatctttgctcaggtggcat 320
Query: 121 cttccagtttcaggtcagcttctggtagcctctctccctggccaatccagagaactccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttccagtttcaggtcagcttctggtagcctctctccctggccaatccagagaactccta 380
Query: 181 gtttcctccactttatctggggtctgtggttatctctgaatcagcccgatggcccatgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttcctccactttatctggggtctgtggttatctctgaatcagcccgatggcccatgga 440
Query: 241 tgtgtattttattggaaacttgtttgcttgtttgttttatttagtt 286
|||| || |||||||||||||||||| |||||||||||||||||||
Sbjct: 441 tgtgcatcttattggaaacttgtttgtttgtttgttttatttagtt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no439_n15.g1 MSMg01no439_n15.g1 CHROMAT_FILE:
MSMg01no439_n15.g1 PHD_FILE: MSMg01no439_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:05 2005
(239 letters)
>mm_chr12_87133830_87134469
Length = 640
Score = 439 bits (227), Expect = e-128
Identities = 236/239 (98%), Gaps = 1/239 (0%)
Strand = Plus / Minus
Query: 1 atctctgagtcaagagtgtcgtcaggagaaaaggtcctgaaaagtggggtgagctggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atctctgagtcaagagtgtcgtcaggagaaaaggtcctgaaaagtggggtgagctggaat 380
Query: 61 gtgggaggaaacagggaaaag-aaaaacaaaacagcttcttgcttcttctcttctcaccc 119
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtgggaggaaacagggaaaagaaaaaacaaaacagcttcttgcttcttctcttctcaccc 320
Query: 120 tactatcttcccacccttcttgctcatccatccgcctcctggcccgggatgaccctgcca 179
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 319 tactatcttcccacccttcttgctcatccatctgcctcctggcctgggatgaccctgcca 260
Query: 180 aagttaagtgagctttggctttaactgaaacagctgttctcagctcggatctccagctg 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aagttaagtgagctttggctttaactgaaacagctgttctcagctcggatctccagctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 640
Length adjustment: 9
Effective length of query: 230
Effective length of database: 631
Effective search space: 145130
Effective search space used: 145130
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
