BAC Information

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BAC

Clone NameMSMg01-440G04
Chromosome12 (Build37)
Map Location 79,082,123 - 79,082,507
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041765, LOC100041772, Fut8, LOC230765, LOC666659
Downstream geneEG626215, Gphn, 4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-440G04.T7 (MSMg01no440_g04.b1)MSMg01-440G04.TJ (MSMg01no440_g04.g1)
ACCAG530515AG530516
length745787
length of high quality
(start - end)
532 (76 - 607)362 (81 - 442)
definitionCHROMAT_FILE: MSMg01no440_g04.b1 PHD_FILE: MSMg01no440_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:49 2005CHROMAT_FILE: MSMg01no440_g04.g1 PHD_FILE: MSMg01no440_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTCTATAATTTGCGGGCGCTAAGACGACGCACTATTTCTAGAGAAG
CCGGGGAGTTCGTTAGACTTCCCACAACTCTAGAGTACAAGGTGGGCTGA
ATTTGTAGGTGAGAGCTCACCTAAATCAGATTCACATAAGGAGGATAATG
AGAGAAGAGGGCATGGAGACGTTATTACTTCAGGAACTCGGGGAAGAAGA
GTTTGGGGGATACCCAGAGGCTATGACAGAATTTGGGCTTTATTCATTTA
AAAATTTTAATTTATATTATGAGCATAAGTGTTTGGCCCATCCATGTGTC
ATGTGCATGCCTGGTGCTAAGCTAACTTATTTTAGAAGAGGGAGTCAGGT
GCCTTGGAACTAGAGTTACAGATGGTTGTAAGCTACCATATGGTACTGGG
AATTGAAAATGGGTCCTCTGTAAGAGGAACAAGTGTTCCTAACTACTGAA
TCATCTATCCTGGTCCCAAGAACCTGGCTTAAATGAAAACAAATCTTATT
TTAAAAACCAGCCCAATGGCTTTTGCTGTACAATCTTGGGAATTACATTT
GAACGTTTTCATCTTCAGTTCATTAGCTGTCAAAGTGGGGATGATAAAAA
CTATTTTGCAATGTTAAAATACTATCTATAATACATACCAAACTCTCAGT
ACACCGTAGATATTTATACACCTCTTTCTGAGTAGTCAAGGACAGACGAT
GTACTTTCTCTAGAAGTAGGAGTTGGCCATCTTTGTTAAAAGGAT
NNCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACGAAGTCATTGTTTTTAA
TAGCTCAGTAGTACTCCATTGTGTATTTTTCTTAACTTATTTTCATTTAT
GTAAGTCTCTTTGAGAATCTTCAATTTATTTTAGAATGGCTATTCCAGGT
TTCTTCTTGAGTCTACTTGCTTGGAAACTCCTTTTCCAAGCCTTCACTCT
GAGTTAATGTCTATCTTTGATGTTCAGGTATGTTTCTTGTATGCAGCCAA
ATGATGGATCCAGTTTTTTCAACCATTTTGATAATAGGCATCTTTTTACT
AGGAGAATTGAATTCATTGAATTTGAGAGATAAAGATCAATAACTGTTAA
TTCCTATTATTTTGATATTGGTGGTGATAGTGGTGTGTGTGTGTNNCNTT
TTTCTTTCTTTTCTTTCTTCTTATCTTTTCTTCTTTTCCCTTCTTCNCTT
TTTCTTTCTCTTCTCTTCCTCTTTCTCCCTTTCCCCTCTCTTTCCTTCTT
CTTCCTCCTCTTTCTCTCTTTTNTTTTTTGTACTTCCTCCACTTCCGCCC
TGCTCTGCGTTGTGTTTTCCTTCTCTTCCCTTTTTTTTTCTCATTTCTTT
TTTTTCTTCCTTTTGGCCCCTCCGACTCCATTCTACTTATTTCCTTTTTT
TTACTTGAATCTTCCCTTTTATAATTTTGATATAATTATCTTTATTTTAT
AATATCTACTAACAATTATAACTATTATCCTCTCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no440_g04.b1 MSMg01no440_g04.b1 CHROMAT_FILE:
MSMg01no440_g04.b1 PHD_FILE: MSMg01no440_g04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:49 2005
         (532 letters)



>mm_chr12_79082123_79083054
          Length = 932

 Score =  690 bits (357), Expect = 0.0
 Identities = 378/391 (96%), Gaps = 12/391 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactctagagtacaaggtgggctgaatttgtaggtgagagctcacctaaatcagattcac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 aactctagagtacaaggtgggctgaatttataggtgagagctcacctaaatcagattcac 326

                                                                       
Query: 61  ataaggaggataatgagagaagagggcatggagacgttattacttcaggaactcggggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaggaggataatgagagaagagggcatggagacgttattacttcaggaactcggggaa 266

                                                                       
Query: 121 gaagagtttgggggatacccagaggctatgacagaatttgggctttattcatttaaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaagagtttgggggatacccagaggctatgacagaatttgggctttattcatttaaaaat 206

                                                                       
Query: 181 tttaatttatattatgagcataagtgtttggcccatccatgtgtcatgtgcatgcctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttaatttatattatgagcataagtgtttggcccatccatgtgtcatgtgcatgcctggt 146

                                                                       
Query: 241 gctaagctaactta------ttttagaagagggagtcaggtgccttggaactagagttac 294
           |||||||||||  |          ||||||||||||||||||||||||||||||||||||
Sbjct: 145 gctaagctaac--agaggcc----agaagagggagtcaggtgccttggaactagagttac 92

                                                                       
Query: 295 agatggttgtaagctaccatatggtactgggaattgaaaatgggtcctctgtaagaggaa 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91  agatggttgtaagctaccatatggtactgggaattgaaaatgggtcctctgtaagaggaa 32

                                          
Query: 355 caagtgttcctaactactgaatcatctatcc 385
           |||||||||||||||||||||||||||||||
Sbjct: 31  caagtgttcctaactactgaatcatctatcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)