NNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCACTAGGATTCACAATTCTTTATTCATCTGATCTTGATTT
AACTTTAATAAGTTATACCTACTGAGAAAATTGTTCATTTCTTTTAAATT
TTCCAATTTGGAGTACAGGTTTTTAAAGTATGATTCTTTTAATTTCCTCA
GTGTTGGTTGTTTGGTTTCCTTTTGGTTTCTGATTTTGTTAATTCAAATA
GTCTGTCTTTTTGTATGTTTGGATAAGGGTTTATATTACTTGTTTATTTT
TTCAAAGAACCAGTTCTTTGTTTCATTATTCTTTGCATTGTTGTCTTTTC
TATTGATTTTGGCCTTCAGCTTGATTATCTTTTACCATCTACCCCTCTTG
GGTGTGATTATTTCTTTTTGTTCTTAAGCTTTGAGGTGTGCTGTTAAGTT
GATAGTATGAGCTCTACCCCTCCCCCATCCCCCCTAAATGTAGGCACTTA
GTGCTGTGAACTTTCCTATTAGTACCTCTTTCATTGTTTTGCATACATTT
GGGTATACTGTGTTTTCATTTTCATTTTATTCAGAAAGTCTTTAATTTCT
TTATTTATTTCTGTCAACTCATTTTCATTCAGTAAAGAGCTTTTCTGTTT
CCACCAGTTTGGAAGCTTTCTGTTGTTGTTGAAATCCATCTTTAGTCCAT
GCTGGTCTGATAAATACCGGGAATTATTCAAATTTCTTG

NNNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCAGAGC
CCCATTTTTTAATGGAGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGT
TCTTTATATATATTGGATATATGTCTTCATTTTTAAAAGAAAAATAAATC
CTACTGACTACACCCCTAATTGGAGCCTTTTTGTTTTTTAATAGATTTAT
TCTGACTTTTATATATCCTTACAGTACATTCTGATCACTTTCCTCTGCCC
ACTCCTAACTCTGTGCCACCTTTCTCTCTCAACAAGTTCCCTTCTCTCTA
TCATGTCTTTCTGTTTCGTCTTTGCTTCTATATTGTGACCCTCCTAATTT
AACCAGGGCCATACAGGAGAACATGGGTGTGGAGCTATAAGCAGGTCTTA
GCAGCTCTATACACAATAGCTAAAAACTGAAAAATCAAATCCCAGCATCT
ATTAGTATACTAAGGGATAAAAGAATTTTCTGCTAAAATGAGGACAAAAA
AAAAAAAGGAGACAAACTAGTGATAACAACAATAAGAAGCCTATCAAAAA
TATGCACAGCAAGTACTTATGTAAGTCAATCAACTTAATGTTGGTGAATG
ATCCAAACTAGCTTACATGAGAGAAGTCAAAACAGTGGGATTAGGGAGGC
GGCTCATTCACTAAAGCGCTTGCCACATGTAATGGTTTGAN

Query= MSMg01no441_g02.g1 MSMg01no441_g02.g1 CHROMAT_FILE:
MSMg01no441_g02.g1 PHD_FILE: MSMg01no441_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:08 2005
         (558 letters)



>mm_chr12_66586984_66587942
          Length = 959

 Score =  955 bits (494), Expect = 0.0
 Identities = 547/574 (95%), Gaps = 17/574 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctcagagccccattttttaatggagttatttgattttctggagtccacctt 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 762 tttgtttagctcagagccccattttttaatggggttatttgattttctggagtccaccct 703

                                                                       
Query: 61  cttgagttctttatatatattggatatatgtcttcatttttaaaagaaaaataaatccta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 cttgagttctttatatatattggatatatgtcttcatttttaaaagaaaaataaatccta 643

                                                                       
Query: 121 ctgactacacccctaattggagcctttttgttttttaatagatttattctgacttttata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 ctgactacacccctaattggagcctttttgttttttaatagatttattctgacttttata 583

                                                                       
Query: 181 tatcctta-cagtacattctgatcactttcctctgcccactcctaactctgtgccacctt 239
           ||||||||  |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 582 tatccttataagtacattctgatcactttcctctgccccctcataactctgtgccacctt 523

                                                                       
Query: 240 tctctctcaacaagttcccttctctctatcatgtctttctgtttcgtctttgcttctata 299
           |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 522 tctctctcaacaagttcccttctctctatcatgtctttctgttttgtcttttcttctata 463

                                                                       
Query: 300 ttgtgaccctcctaatttaaccagggccatacaggagaacatgggtgtggagctataagc 359
           ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 462 ttgtgaccctcctaatttaaccagggccacacagg-gaacatgggtgtggagctataagc 404

                                                                       
Query: 360 aggtcttagcagctctatacacaatagctaaaaactgaaaaatcaaatcccagcatctat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 aggtcttagcagctctatacacaatagctaaaaactgaaaaatcaaatcccagcatctat 344

                                                                       
Query: 420 tagtatactaagggataaaagaattttctgctaaaatgaggac---------------aa 464
           ||||||||||||||||||||||||||||| |||||||||||||               ||
Sbjct: 343 tagtatactaagggataaaagaattttctactaaaatgaggaccaaaaaaaaaaaaaaaa 284

                                                                       
Query: 465 aaaaaaaaaaggagacaaactagtgataacaacaataagaagcctatcaaaaatatgcac 524
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 aaaaaaaaaagtagacaaactagtgataacaacaataagaagcctatcaaaaatatgcac 224

                                             
Query: 525 agcaagtacttatgtaagtcaatcaacttaatgt 558
           ||||||||||||||||||||||||||||||||||
Sbjct: 223 agcaagtacttatgtaagtcaatcaacttaatgt 190


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 959
Length adjustment: 10
Effective length of query: 548
Effective length of database: 949
Effective search space:   520052
Effective search space used:   520052
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)