BAC Information

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BAC

Clone NameMSMg01-442B02
Chromosome12 (Build37)
Map Location 65,686,693 - 65,687,144
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435302, EG623046
Downstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442B02.T7 (MSMg01no442_b02.b1)MSMg01-442B02.TJ (MSMg01no442_b02.g1)
ACCAG531801AG531802
length753767
length of high quality
(start - end)
404 (52 - 455)453 (81 - 533)
definitionCHROMAT_FILE: MSMg01no442_b02.b1 PHD_FILE: MSMg01no442_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:05 2005CHROMAT_FILE: MSMg01no442_b02.g1 PHD_FILE: MSMg01no442_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCTCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACCTGACGAATACCGAATGGCTGAGAAGCTCCTGAAA
AAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCT
GAGATTCCACTTCACTCCAGTCAGAATGGCTAAGGTCAAAATTTCAGGTG
ACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGT
TGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTT
CCTCAGAAAATTGGACATAGTACTACTGGAGCATCCCGCAATACCTCTCC
TGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGAACACATGCTCC
ACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACC
CAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACA
CAATGGAATACTACTCAGCTATTATAAAAATGAATTTATGAAATTCCTAG
GCTAATGGATGGACCTGGAGGGCATCATCTTGAGTGAGGTAACACAAATC
CAAAGGAACTTACACTCTATGTACTCTCTGATAACTGGATATTATTCCTT
CAACTTTATGAAACCTCCACATATTATGCACTAACTTGCTAAACCATATC
GAAATTTTTCAATAACCGACTATTTACCTGGTGGAACCTTTGCTCCCTTC
CTA
NACCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAACCTGCCAACTCCAG
AACAAATTCGCTAAGAGGTTTCAAATATTCAGCTATTCGTTTTGTACAGC
AATAAAGGCCACCAATAGTACTTTCACAGTCTTTTGAAAAGTTGAAAACA
CTCTATGCTGCCTTCAAGTAGAGTCGTTTACAGAATGTTAAAATAGCAGT
AGCCTTGGATCCACTTGAGACAGCAAACATACAGTTATGTGATAATATAA
ATTCCTTTTGGTAGGGGTTTTCTGACTTGCAAATAAAGAGCATATGAAAT
TATGATGACCCACAGAGGGGAAAAATGAAATCTCATTTAGCCAACTCACA
AGATGATGTAGCAAGAATGTCTTCTCCTTCTGATCTTCCTGGGGCAGTGT
CAAGTGCTATTTATAATTACTTACCAATCATTCTTGACCTTCTGCTGATA
GATTATAAATGTTCCTTCTCTTCTTAAAGAACATTATCTCTTAAAGAGAA
CTCTTCTTTCCCATTTTGAAATCCATAACTTTTTTCATAGTTTTAGAGGT
CAGAATGTCTATGCTTCCTTCTAGTATCAACGCACAAGGCCTGAAGTTGT
TTTCCTTAATACTGCCACCTATACCTATTTGGTTAACAAGTAAAATCTTT
TTATTTCCTCCCCATCCTTTCTTCTTTTTTGTGATTTTTCTCGCCCCTTT
ATACATTTTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_b02.g1 MSMg01no442_b02.g1 CHROMAT_FILE:
MSMg01no442_b02.g1 PHD_FILE: MSMg01no442_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:05 2005
         (453 letters)



>mm_chr12_65686492_65687344
          Length = 853

 Score =  851 bits (440), Expect = 0.0
 Identities = 449/452 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   caaaacctgccaactccagaacaaattcgctaagaggtttcaaatattcagctattcgtt 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 202 caaaacctgccaactccagaacaaattcgctaagaggtttcaaatattcagctatttgtt 261

                                                                       
Query: 62  ttgtacagcaataaaggccaccaatagtactttcacagtcttttgaaaagttgaaaacac 121
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttctacagcaataaaggccaccaatagtactttcacagtcttttgaaaagttgaaaacac 321

                                                                       
Query: 122 tctatgctgccttcaagtagagtcgtttacagaatgttaaaatagcagtagccttggatc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctatgctgccttcaagtagagtcgtttacagaatgttaaaatagcagtagccttggatc 381

                                                                       
Query: 182 cacttgagacagcaaacatacagttatgtgataatataaattccttttggtaggggtttt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacttgagacagcaaacatacagttatgtgataatataaattccttttggtaggggtttt 441

                                                                       
Query: 242 ctgacttgcaaataaagagcatatgaaattatgatgacccacagaggggaaaaatgaaat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ctgacttgcaaataaagagcatatgaaattatgatgacccacagaggggaaaaatgaaat 501

                                                                       
Query: 302 ctcatttagccaactcacaagatgatgtagcaagaatgtcttctccttctgatcttcctg 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctcatttagccaactcacaagatgatgtagcaagaatgtcttctccttctgatcttcctg 561

                                                                       
Query: 362 gggcagtgtcaagtgctatttataattacttaccaatcattcttgaccttctgctgatag 421
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 562 gggcagtgtcaagtgctatttataattacttactaatcattcttgaccttctgctgatag 621

                                           
Query: 422 attataaatgttccttctcttcttaaagaaca 453
           ||||||||||||||||||||||||||||||||
Sbjct: 622 attataaatgttccttctcttcttaaagaaca 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)