BAC Information

Click to search

BAC

Clone NameMSMg01-442C22
Chromosome12 (Build37)
Map Location 43,195,997 - 43,360,154
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrn3, Immp2l, EG638533
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442C22.T7 (MSMg01no442_c22.b1)MSMg01-442C22.TJ (MSMg01no442_c22.g1)
ACCAG531888AG531889
length797771
length of high quality
(start - end)
391 (35 - 425)382 (77 - 458)
definitionCHROMAT_FILE: MSMg01no442_c22.b1 PHD_FILE: MSMg01no442_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:14 2005CHROMAT_FILE: MSMg01no442_c22.g1 PHD_FILE: MSMg01no442_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,359,780 - 43,360,154)(43,195,997 - 43,196,376)
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCG
GAATTCATTAAATCTATCGGGTATAACATTTCATTTTAAATGTTTGAGTT
GTCATCAAATTGCAGTTTTCCAAACCCAGAAACCAAACATAATGATTTTG
AGATGAAGAGTGGAAATGTTTGAACTGTTTACTAAAATATATTACTGGTT
CCCAATAAATTCCACTGTATTATTTGCCTTCATTTTTTTTAAGCTAACTG
CAGAATGAAGTGACTGGCCCCAGGTTTGGCATACAGTGTTTTCTTAGGGT
TTTACTGCTGTGAACAGACACCATGACTTATGCAACTCTTAGAAAGACAA
CATTTCATTGGAGCTGGCTTACAGGTTCAGAGGTTCAGTCCACTATCATG
TACGCAAGAGCAGAGAGGCATCCAGGCTGGTATGGTACAGGCAAAACAGA
GAATTCTACCTCATCTGAAGGCTGCTATCATAATACTGACTTCTATGAAA
CTACAATAAACGTCTAGTCCGCTAATGGATGGATCATAGGGCTCCCCTTG
TAGAATTTCATAAAAAAATCCCTGGATCTAAGTTATCCTTTACCCTTTTT
CTGGGCCCTCCTTTTTTTCTCCCTTTCCCCTTTTATTTTTGTTCCTTACT
CTATGCGACCCACACAAGTTTTTTTTCCCCCCCTTTTTTTTCCCATACCC
TCTCTTTCCCTTATTTTATTTTTCCTCCCCACCTCGCTTTTTTTTCTTTT
CCCCCCCCTCTCTTCCATTTTTCTATTTCTTTTTTCTTTCTACCCTN
NACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAAATCTAATACCTTTTACT
GGCTTCTTTGGCACCAGGCATGCACATGATACATAAAAGTAGATGCAAGA
AGACACACACATGAATTAAGTTTAAAAAATAAGTTAAAAAATCTTTGTAA
AAATTTTGTTATCACTGATATGAAAGCAGCCCTAGCTTCTTTCCTCTTTA
TTGTCTTTCTTATGTCCATACATATGAACTAAGTTCTATAAATTTCAGAA
TTTATACCATCTAGTATACTCTTTAAAATTCATATTTGTTGAGAGCAAAC
AAGATCTGATTTGACCTTACCTTATGCTATCTGCAGAATAGATCTAAGGT
GGTGCTTCTTGTGGGTGGATAGGCATGGATAAAGTATGAGTTTTATAGAG
AGAATATTTTTAAATTTTTTTATTGTAANATAAAAATTAAATTATATATT
TGATATGATTGGTGTAGTTGAAATTTTTTTTTTTTGTTAATATTTTTTTA
TTGTTATTATTTTTTTTATTATTTTTTTTTTTTTATTATTTGTTTTTATA
ATTTTTTTTTTTTTTTTTATTTTTTTTTTGTTATTTTTTTTTATTATTTG
TTTTATTTTATGTTTATTTATTGGAATTGTTTTTTTTTTTTTTTTTTTTA
TTTTTTTAAGATTTTATATTTTTTTTGTATTATTTGTTTGTAGTTTTTTT
GTTTTTTTTTTTTTAAATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_c22.b1 MSMg01no442_c22.b1 CHROMAT_FILE:
MSMg01no442_c22.b1 PHD_FILE: MSMg01no442_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:14 2005
         (391 letters)



>mm_chr12_43359696_43360486
          Length = 791

 Score =  656 bits (339), Expect = 0.0
 Identities = 366/375 (97%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattcattaaatctatcgggtataacatttcattttaaatgtttgagttgtcatcaaat 76
           |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 459 gaattcattaaatccattgggtataatatttcattttaaatgtttgagttgtcatcaaat 400

                                                                       
Query: 77  tgcagttttccaaacccagaaaccaaacataatgattttgagatgaagagtggaaatgtt 136
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 399 tgcagttttccaaacccagaaaccaaacatagtgattttgagatgaagagtggaaatgtt 340

                                                                       
Query: 137 tgaactgtttactaaaatatattactggttcccaataaattccactgtattatttgcctt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgaactgtttactaaaatatattactggttcccaataaattccactgtattatttgcctt 280

                                                                       
Query: 197 cattttttttaagctaactgcagaatgaagtgactggccccaggtttggcatacagtgtt 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cattttttttaagctaactgcagaatgaagtgactggccccaggtttggcatacagtgtt 220

                                                                       
Query: 257 ttcttagggttttactgctgtgaacagacaccatgacttatgcaactcttagaaagacaa 316
           ||||||||||||| |||||||||||||||||||||||  | |||||||||||||||||||
Sbjct: 219 ttcttagggttttgctgctgtgaacagacaccatgaccaaggcaactcttagaaagacaa 160

                                                                       
Query: 317 catttcattggagctggcttacaggttcagaggttcagtccactatcatgtacgcaagag 376
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 159 catttcattggagctggcttacaggttcagaggttcagtccactatcatgtaggcaagag 100

                          
Query: 377 cagagaggcatccag 391
           |||||||||||||||
Sbjct: 99  cagagaggcatccag 85


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no442_c22.g1 MSMg01no442_c22.g1 CHROMAT_FILE:
MSMg01no442_c22.g1 PHD_FILE: MSMg01no442_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:14 2005
         (382 letters)



>mm_chr12_43195797_43196578
          Length = 782

 Score =  719 bits (372), Expect = 0.0
 Identities = 378/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaaaatctaataccttttactggcttctttggcaccaggcatgcacatgatacataa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaaaatctaatatcttttactggcttctttggcaccaggcatgcacatgatacataa 260

                                                                       
Query: 61  aagtagatgcaagaagacacacacatgaattaagtttaaaaaataagttaaaaaatcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtagatgcaagaagacacacacatgaattaagtttaaaaaataagttaaaaaatcttt 320

                                                                       
Query: 121 gtaaaaattttgttatcactgatatgaaagcagccctagcttctttcctctttattgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaaaattttgttatcactgatatgaaagcagccctagcttctttcctctttattgtct 380

                                                                       
Query: 181 ttcttatgtccatacatatgaactaagttctataaatttcagaatttataccatctagta 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ttcttatgtccatacatatgaactaagttctataaatttcagaatttacaccatctagta 440

                                                                       
Query: 241 tactctttaaaattcatatttgttgagagcaaacaagatctgatttgaccttaccttatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tactctttaaaattcatatttgttgagagcaaacaagatctgatttgaccttaccttatg 500

                                                                       
Query: 301 ctatctgcagaatagatctaaggtggtgcttcttgtgggtggataggcatggataaagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctatctgcagaatagatctaaggtggtgcttcttgtgggtggataggcatggataaagta 560

                               
Query: 361 tgagttttatagagagaata 380
           ||||||||||||||||||||
Sbjct: 561 tgagttttatagagagaata 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)