BAC Information

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BAC

Clone NameMSMg01-442K03
Chromosome12 (Build37)
Map Location 120,996,450 - 121,123,713
singlet/doubletdoublet
Overlap geneLOC668633
Upstream geneEG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011, 4732474O15Rik, LOC668632
Downstream geneGm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442K03.T7 (MSMg01no442_k03.b1)MSMg01-442K03.TJ (MSMg01no442_k03.g1)
ACCAG532231AG532232
length752753
length of high quality
(start - end)		478 (74 - 551)491 (79 - 569)
definitionCHROMAT_FILE: MSMg01no442_k03.b1 PHD_FILE: MSMg01no442_k03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005CHROMAT_FILE: MSMg01no442_k03.g1 PHD_FILE: MSMg01no442_k03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,996,450 - 120,996,927)(121,123,223 - 121,123,713)
sequence
GGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXATACAAAAGAGGATC
CGCGGAATTCTTCAATACACAAGATATTCCCACCTTTTGTTTCAACAGAG
TTAAATATAGTTTTTTTCTGGCAGTGGTATATCTCTTGATTTCAATTTTT
TTGAACATATTCTTCCTGTTTAGCTCACCTACTGTAAATTTTTTACAGAT
ATCTCTTAGACATCTAAAATCAGATGTTAAGAAATGAAGATATGTTTTCA
CTGTTTCTCTATATAATTTTAAATCATACATACATATTTTGAGAATGTCA
ATGTAGTGACTATATTTAATATTATTAGATATAAGGAAAGCACATGAAGG
AAATATACCTTGTAATGTGTTCAGTGTTCAGAGCTAATGTAATTTAGAAA
AAGTATCAAAGGAAACTAATATTATCTAGTGAGATCTGAAAAGTACAGTT
AATTCCATAAAGTCATGTGAAGGTAGTGTTTCAAACACTGATGACAATTG
CCTTAAGTGGACTGAAGTTCAATATTTACAACAGTGGGTTGCTTTTAGAG
ACAGGAGGAAGTATAGTGGTGTCTTTTTACTTACTTGATTCTCTGTGTGT
CGTTGTTGCCACTTTGTTTTGTCCATAATTTTTTAACCTTTTTCTCCATT
CTTTTTTTATTTTCCAAATTTTATCACCTGAAACTACAACTTTTTGGATA
TATTACTAATTCACCGCCTTCTTAGACATCTAATTTTATTCTCAATATAA
TG

CCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTTCTTTATATTACAATG
TGAAGTCTATAGGGTCAGTCATTTGGGGCCTGGATTATAGTAGTCCCTGT
ATAAATTTTGGTTTTAGTTGAACATGCTTTGTTAAATAGTGATGTAATAT
CCACTGGAGACACTGAAGAAAAATATTTAATAAGGAAATTTCAGAACCAA
CCAATACAGAAATGATCCCAGTCCAGCACATATTTAGTTTGTAATCTTGG
GGAAATTATTTAAAATTTACCAAATGAAATCACCACAGTATATGGCTAAA
AGGTCCAAGATGTTACTTACATCACCCTTCTCATTTTCTTAAAATACCTT
TCTTTAGAACATAAGAAATAGTTTTACTCCCATTATTAGTTTTATTGATA
CTGAAACCAATAAGGACCCTGGTAGGAAAAATTCATCACAGGCCTTAAAA
ATAAGTATCCTTTAAGACTTTTAAAATCCGTTTAAGATACAGAAAAGTAA
TTAAAGAGTCTGGAATCTTTAGCAGTACAGGAAGTATTACTCTAGTTGAC
TTTCCTATATCTGAGGCCCCAATCAGAGAATATGCTAGATTATACAGAGT
TGTGTCTTGAATACCTTCCCAAACTGAAATTTTTTGTTTTCTGATTTCTA
CTCTCAGCGTACCCAATCTGTTATTGTGGTCATTTTTGCCCCTTTCTCCC
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_k03.b1 MSMg01no442_k03.b1 CHROMAT_FILE:
MSMg01no442_k03.b1 PHD_FILE: MSMg01no442_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:53 2005
         (478 letters)



>mm_chr12_120996250_120997127
          Length = 878

 Score =  901 bits (466), Expect = 0.0
 Identities = 475/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattcccaccttttgtttcaacagagttaaatatagtttttttctggcagtggtatatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattcccaccttttgtttcaacagagttaaatatagtttttttctggcagtggtatatc 260

                                                                       
Query: 61  tcttgatttcaatttttttgaacatattcttcctgtttagctcacctactgtaaattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgatttcaatttttttgaacatattcttcctgtttagctcacctactgtaaattttt 320

                                                                       
Query: 121 tacagatatctcttagacatctaaaatcagatgttaagaaatgaagatatgttttcactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 tacagatatctcttagacatctaaaatcagatgttaagaaatgaagatatgtttttactg 380

                                                                       
Query: 181 tttctctatataattttaaatcatacatacatattttgagaatgtcaatgtagtgactat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttctctatataattttaaatcatacatacatattttgagaatgtcaatgtagtgactat 440

                                                                       
Query: 241 atttaatattattagatataaggaaagcacatgaaggaaatataccttgtaatgtgttca 300
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaatattacaagatataaggaaagcacatgaaggaaatataccttgtaatgtgttca 500

                                                                       
Query: 301 gtgttcagagctaatgtaatttagaaaaagtatcaaaggaaactaatattatctagtgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgttcagagctaatgtaatttagaaaaagtatcaaaggaaactaatattatctagtgag 560

                                                                       
Query: 361 atctgaaaagtacagttaattccataaagtcatgtgaaggtagtgtttcaaacactgatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atctgaaaagtacagttaattccataaagtcatgtgaaggtagtgtttcaaacactgatg 620

                                                                     
Query: 421 acaattgccttaagtggactgaagttcaatatttacaacagtgggttgcttttagaga 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaattgccttaagtggactgaagttcaatatttacaacagtgggttgcttttagaga 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_k03.g1 MSMg01no442_k03.g1 CHROMAT_FILE:
MSMg01no442_k03.g1 PHD_FILE: MSMg01no442_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:53 2005
         (491 letters)



>mm_chr12_121123023_121123913
          Length = 891

 Score =  934 bits (483), Expect = 0.0
 Identities = 489/491 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttttctttatattacaatgtgaagtctatagggtcagtcatttggggcctggattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 atcttttctttatattacaatgtgaagtctatagggtcagtcatttggggcctggattat 632

                                                                       
Query: 61  agtagtccctgtataaattttggttttagttgaacatgctttgttaaatagtgatgtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 agtagtccctgtataaattttggttttagttgaacatgctttgttaaatagtgatgtaat 572

                                                                       
Query: 121 atccactggagacactgaagaaaaatatttaataaggaaatttcagaaccaaccaataca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 atccactggagacactgaagaaaaatatttaataaggaaatttcagaaccaaccaataca 512

                                                                       
Query: 181 gaaatgatcccagtccagcacatatttagtttgtaatcttggggaaattatttaaaattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gaaatgatcccagtccagcacatatttagtttgtaatcttggggaaattatttaaaattt 452

                                                                       
Query: 241 accaaatgaaatcaccacagtatatggctaaaaggtccaagatgttacttacatcaccct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 accaaatgaaatcaccacagtatatggctaaaaggtccaagatgttacttacatcaccct 392

                                                                       
Query: 301 tctcattttcttaaaatacctttctttagaacataagaaatagttttactcccattatta 360
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tctcatttccttaaaatacctttctttagaacataagaaatagttttactcccattatta 332

                                                                       
Query: 361 gttttattgatactgaaaccaataaggaccctggtaggaaaaattcatcacaggccttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 331 gttttattgatactgaaaccaataaggaccctggtaggaaaaattcatcacaggctttaa 272

                                                                       
Query: 421 aaataagtatcctttaagacttttaaaatccgtttaagatacagaaaagtaattaaagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaataagtatcctttaagacttttaaaatccgtttaagatacagaaaagtaattaaagag 212

                      
Query: 481 tctggaatctt 491
           |||||||||||
Sbjct: 211 tctggaatctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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