MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-442K06
Chromosome	12 (Build37)
Map Location	74,408,851 - 74,409,023
singlet/doublet	singlet
Overlap gene	Slc38a6
Upstream gene	Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5
Downstream gene	EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2
Link	Open Mouse BAC browser

Click to get alignment info.

name	Rtn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104001 MGI:1933947
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Lrrc9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78257 MGI:1925507
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810048J11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67708 MGI:1914958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC209183 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:209183
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	LOC100041323 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041323
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Dhrs7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66375 MGI:1913625
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041157 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041157
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	5033425G24Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75998 MGI:1923248
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Ppm1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19042 MGI:99878
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Six6os1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75801 MGI:1923051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Six6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20476 MGI:1341840
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041234 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041234
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Six1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20471 MGI:102780
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Six4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20474 MGI:106034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mnat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17420 MGI:106207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Trmt5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76357 MGI:1923607
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc38a6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:625098 MGI:3648156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins

name	EG666356 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666356 MGI:3646560
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tmem30b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238257 MGI:2442082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2210039B01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73644 MGI:1920894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Prkch (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18755 MGI:97600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG666385 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666385 MGI:3643190
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	LOC100041489 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041489
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Hif1a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15251 MGI:106918
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG277089 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:277089 MGI:3645720
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	Snapc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75627 MGI:1922877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Syt16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238266 MGI:2673872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1700086L19Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74284 MGI:1921534
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs

name	Dbpht2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:386753 MGI:2679513
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rtn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56090142 GeneID:104001 MGI:1933947
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 1 transcript_id : NM_153457.6

name	Lrrc9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353356 GeneID:78257 MGI:1925507
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 9 transcript_id : NM_030070.2

name	1810048J11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430538 GeneID:67708 MGI:1914958
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1810048J11 gene transcript_id : NM_026327.3

name	Dhrs7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801865 GeneID:66375 MGI:1913625
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dehydrogenase/reductase (SDR family) member 7 transcript_id : NM_025522.2

name	5033425G24Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263295 GeneID:75998 MGI:1923248
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5033425G24 gene transcript_id : XM_001475910.1

name	Ppm1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560649 GeneID:19042 MGI:99878
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 1A, magnesium dependent, alpha isoform transcript_id : NM_008910.2

name	Six6os1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802018 GeneID:75801 MGI:1923051
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Six6 opposite strand transcript 1 transcript_id : NM_029444.2

name	Six6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801322 GeneID:20476 MGI:1341840
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 6 homolog (Drosophila) transcript_id : NM_011384.3

name	Six1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802854 GeneID:20471 MGI:102780
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 1 homolog (Drosophila) transcript_id : NM_009189.2

name	Six4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130178 GeneID:20474 MGI:106034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sine oculis-related homeobox 4 homolog (Drosophila) transcript_id : NM_011382.2

name	Mnat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89363037 GeneID:17420 MGI:106207
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : menage a trois 1 transcript_id : NM_008612.2

name	Trmt5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981335 GeneID:76357 MGI:1923607
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TRM5 tRNA methyltransferase 5 homolog (S. cerevisiae) transcript_id : NM_029580.2

name	Slc38a6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392951 GeneID:625098 MGI:3648156
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 3 Proteins product : solute carrier family 38, member 6 transcript_id : XM_983207.1

name	EG666356 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392953 GeneID:666356 MGI:3646560
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666356 transcript_id : XM_983277.1

name	Tmem30b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371461 GeneID:238257 MGI:2442082
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane protein 30B transcript_id : NM_178715.3

name	2210039B01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263304 GeneID:73644 MGI:1920894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2210039B01 gene transcript_id : XM_001476411.1

name	Prkch (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130661 GeneID:18755 MGI:97600
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein kinase C, eta transcript_id : NM_008856.3

name	EG666385 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263306 GeneID:666385 MGI:3643190
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 ESTs product : predicted gene, EG666385 transcript_id : XM_983512.2

name	LOC100041489 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149263308 GeneID:100041489
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100041489 transcript_id : XM_001476471.1

name	Hif1a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7363432 GeneID:15251 MGI:106918
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypoxia inducible factor 1, alpha subunit transcript_id : NM_010431.1

name	EG277089 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263302 GeneID:277089 MGI:3645720
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : predicted gene, EG277089 transcript_id : XM_204772.4

name	Snapc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386213 GeneID:75627 MGI:1922877
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : small nuclear RNA activating complex, polypeptide 1 transcript_id : NM_178392.4

name	Syt16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:121674808 GeneID:238266 MGI:2673872
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : synaptotagmin XVI transcript_id : NM_172804.2

name	1700086L19Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94392961 GeneID:74284 MGI:1921534
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 23 ESTs product : RIKEN cDNA 1700086L19 gene transcript_id : XM_358420.3

name	Dbpht2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115311549 GeneID:386753 MGI:2679513
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA binding protein with his-thr domain transcript_id : NM_198866.2

name	Rtn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982561 CCDS:CCDS25968.1 GeneID:104001 MGI:1933947
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : isoform RTN1-A is encoded by transcript variant 1 product : reticulon 1 isoform RTN1-A protein_id : NP_703187.2

name	Lrrc9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313428 GeneID:78257 MGI:1925507
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine rich repeat containing 9 protein_id : NP_084346.1

name	1810048J11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430539 GeneID:67708 MGI:1914958
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC67708 protein_id : NP_080603.2

name	Dhrs7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313492 GeneID:66375 MGI:1913625
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0008152 - metabolism [Evidence IEA] codon_start : 1 product : retinal short-chain dehydrogenase/reductase 4 protein_id : NP_079798.1

name	5033425G24Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263296 GeneID:75998 MGI:1923248
definition	codon_start : 1 product : hypothetical protein LOC75998 protein_id : XP_001475960.1

name	Ppm1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679443 CCDS:CCDS25970.1 GeneID:19042 MGI:99878
definition	GO_component : GO:0008287 - protein serine/threonine phosphatase complex [Evidence IEA] GO_function : GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IDA]; GO:0004722 - protein serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IDA] codon_start : 1 note : Mpp alpha product : protein phosphatase 1A, magnesium dependent, alpha isoform protein_id : NP_032936.1

name	Six6os1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313086 CCDS:CCDS25971.1 GeneID:75801 MGI:1923051
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0007275 - development [Evidence IEA]; GO:0001747 - eye development (sensu Mammalia) [Evidence NAS]; GO:0051090 - regulation of transcription factor activity [Evidence NAS] codon_start : 1 note : Six6 antisense product : Six6 opposite strand transcript 1 protein_id : NP_083720.1

name	Six6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755524 CCDS:CCDS25972.1 GeneID:20476 MGI:1341840
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : sine oculis-related homeobox 6 homolog protein_id : NP_035514.1

name	Six1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859494 CCDS:CCDS25973.1 GeneID:20471 MGI:102780
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0048704 - embryonic skeletal morphogenesis [Evidence IGI]; GO:0042472 - inner ear morphogenesis [Evidence IGI]; GO:0051451 - myoblast migration [Evidence IGI]; GO:0045664 - regulation of neuron differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA]; GO:0007519 - striated muscle development [Evidence IGI]; GO:0006350 - transcription [Evidence IEA]; GO:0001657 - ureteric bud development [Evidence IGI] codon_start : 1 exception : mismatches in translation product : sine oculis homeobox homolog 1 protein_id : NP_033215.1

name	Six4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33859632 CCDS:CCDS25974.1 GeneID:20474 MGI:106034
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0048704 - embryonic skeletal morphogenesis [Evidence IGI]; GO:0042472 - inner ear morphogenesis [Evidence IGI]; GO:0051451 - myoblast migration [Evidence IGI]; GO:0045941 - positive regulation of transcription [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007519 - striated muscle development [Evidence IGI] codon_start : 1 product : sine oculis-related homeobox 4 homolog protein_id : NP_035512.1

name	Mnat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89363038 GeneID:17420 MGI:106207
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : menage a trois 1 protein_id : NP_032638.2

name	Trmt5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313170 GeneID:76357 MGI:1923607
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : TRM5 tRNA methyltransferase 5 homolog protein_id : NP_083856.1

name	Slc38a6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392952 GeneID:625098 MGI:3648156
definition	codon_start : 1 product : solute carrier family 38, member 6 protein_id : XP_988301.1

name	EG666356 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94392954 GeneID:666356 MGI:3646560
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988371.1

name	Tmem30b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520139 CCDS:CCDS25975.1 GeneID:238257 MGI:2442082
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : transmembrane protein 30B protein_id : NP_848830.1

name	2210039B01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263305 GeneID:73644 MGI:1920894
definition	codon_start : 1 product : hypothetical protein LOC73644 protein_id : XP_001476461.1

name	Prkch (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543511 CCDS:CCDS25976.1 GeneID:18755 MGI:97600
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0019992 - diacylglycerol binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : protein kinase C, eta protein_id : NP_032882.2

name	EG666385 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263307 GeneID:666385 MGI:3643190
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988606.2

name	LOC100041489 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149263309 GeneID:100041489
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001476521.1

name	Hif1a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7363433 CCDS:CCDS25977.1 GeneID:15251 MGI:106918
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0009434 - flagellum (sensu Eukaryota) [Evidence IDA]; GO:0005792 - microsome [Evidence IEA]; GO:0005634 - nucleus [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0035035 - histone acetyltransferase binding [Evidence ISS]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0000155 - two-component sensor activity [Evidence IEA] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IMP]; GO:0001947 - heart looping [Evidence IMP]; GO:0042592 - homeostasis [Evidence ISS]; GO:0001755 - neural crest cell migration [Evidence IMP]; GO:0045941 - positive regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0042981 - regulation of apoptosis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] [Evidence ISS]; GO:0001666 - response to hypoxia [Evidence ISS] [Evidence IDA]; GO:0007165 - signal transduction [Evidence IEA] [Evidence ISS]; GO:0006350 - transcription [Evidence IEA]; GO:0000160 - two-component signal transduction system (phosphorelay) [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypoxia inducible factor 1, alpha subunit protein_id : NP_034561.1

name	EG277089 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263303 GeneID:277089 MGI:3645720
definition	codon_start : 1 product : similar to endothelial monocyte-activating polypeptide protein_id : XP_204772.4

name	Snapc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30409986 CCDS:CCDS25978.1 GeneID:75627 MGI:1922877
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : small nuclear RNA activating complex, polypeptide 1 protein_id : NP_848479.1

name	Syt16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:121674809 GeneID:238266 MGI:2673872
definition	GO_component : GO:0016021 - integral to membrane [Evidence ISS] GO_function : GO:0005544 - calcium-dependent phospholipid binding [Evidence IDA]; GO:0005543 - phospholipid binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0046982 - protein heterodimerization activity [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA] codon_start : 1 note : synaptotagmin XIV-related; synaptotagmin 14-like product : synaptotagmin XVI protein_id : NP_766392.2

name	1700086L19Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38050426 GeneID:74284 MGI:1921534
definition	codon_start : 1 product : hypothetical protein LOC74284 protein_id : XP_358420.1

name	Dbpht2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38524610 CCDS:CCDS25979.1 GeneID:386753 MGI:2679513
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : DNA binding protein with his-thr domain protein_id : NP_942566.1

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 6 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 5 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 4 pseudo : _no_value

name	LOC100041323 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041323
definition	number : 1 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 3 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 2 pseudo : _no_value

name	LOC209183 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:209183
definition	number : 1 pseudo : _no_value

name	LOC100041157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041157
definition	number : 2 pseudo : _no_value

name	LOC100041157 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041157
definition	number : 1 pseudo : _no_value

name	LOC100041234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041234
definition	number : 3 pseudo : _no_value

name	LOC100041234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041234
definition	number : 2 pseudo : _no_value

name	LOC100041234 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100041234
definition	number : 1 pseudo : _no_value

clone name	MSMg01-464P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-121M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-505A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-153L04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-114E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-082B23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-132O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180L07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293F03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-429A01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-140N20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-174F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470L22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452E06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265A03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-045C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429A10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-053N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076L17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217L21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518I15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063J19
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-195B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532B09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379G01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-123H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-349O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-179I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-050G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064E07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134G18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347N20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-063N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-086C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-285C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-126I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321D07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093A10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134L17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244N03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-028H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045K14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-332J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015G03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-044L02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164J19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-270P04
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-442K06.T7 (MSMg01no442_k06.b1)	MSMg01-442K06.TJ (MSMg01no442_k06.g1)
ACC	AG532237	AG532238
length	760	812
length of high quality (start - end)	40 (98 - 137)	192 (80 - 271)
definition	CHROMAT_FILE: MSMg01no442_k06.b1 PHD_FILE: MSMg01no442_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:53 2005	CHROMAT_FILE: MSMg01no442_k06.g1 PHD_FILE: MSMg01no442_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:54 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GTCCCCCCGTAGTTGCGGCGGTGAAAGAGTCGCATTCAGACCCCGCCGCG GAAGTCTCCTGTTACAGCATCCGCGATNGAAGCCTTGTTCTCCAAGCTAA AGGTAATAAAAGGCTAGAGTCTGTAATTGGGAAGAGAGAGAGAGAGAGCG ACAGACCCCTCGCCCGGCCGCCGGCCCGGCGCCCCCCAGGTGCGGGTCAC CCGCCCCGCCCCTGCCCGAGGGCCCCGCGCCCCCCCCCCACCCCCCCCCC CTTTGTCCCTCCCCCCCCTCCGGCCGCCCCCCCGCCCTCCCGCGCCCGGG CCTGGCACCCCCCCCCCCCCCTTGTGTTTTCCGGCCCCCCCCCCCCCGCC CCCCCCCCCGTTCCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCGACGC CACCCCCCCCCCCCCCCCCCCTCCCCCCTCCCCGGCCCCGCCCGCCCCCC CCCCCCCCCCCCCCCCCCCCTCCCCCCCCCTCTCCCCCCCCCCCCCATCC CCCCTCCCCCCCCTCCCCCCCCCCGCCCGCCCCCCCGCCCCCGCCCCCGC CCCGTCCCCCCCCCGCCCCCGCCCCCCCCCCCCCCGCCCCCTCCTCTCGC TGACTCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCTCCC CCCCCCCCCCCCCTCCCCCCCCCCCTTCTCCCCCCCCCCCCCGCCCGCCC CTCCCCTCTCCCCCCCCCCCGCCTCCCCCTCCTCCCCTGCCTCTTGCTGT CGCCCCTCTC	AAAGGCCGATGCAGTGGGAGGCCTGGNGGNCGCCGGTAACTATCAGXXXX XXXXXXXXXXXXXXXTACAAGACGCAGTCATTGAATATGCAGTTTAAGCT CACAGCTGTATCTAATAAGATGTAAGTGTGGCCATCATTGAGAAAGACAG AAACCGTGACCGGCATTGCTGATGAGTCACCATTATGTCTGACTAGACAG TGACTAAAGGGGGAAAGGCTCAGAGAATGGGGGTGTTTATCATTGGAAAA CCTTTTTTTTGTTTTTCAAGTAGTAAGGCATTGAGGTCAGGTAATTTCTA TAAAGTGCACCAAAAAATTTTTTTTTTTTTACAACATACAAATGTTCTTC TTACGCCCCATTTGTTTCCCGCCACCCTTGTCGCGTAGTTTCCCTGTCTT TCTGACACAAACAGGCGCCCCCCCCCCCATTTTTTCTTTTTCCTCAATCT AGACCTCCTTCTTCCCCCATTCGTTTCTTCTCTTTTCCTTCCTTTTTCTT ACTATTCGTTCTTTTCCCCTTTTTATTTTCCCCCCTCCTCTTTTTTTTTC CCTTCCCCTCCTCTTCACTTTTCTTCCAGTAACTCCCTCGCTCTTTTCTT CCTTCTCCCTTCCTCCTCCCTCTTCCTTACTTCTCTTCCCCCCCGCCCTC TTTTTCTCTTCTTCTCTTCCTCTTCTCTTCTTTCTTTACTTTTCCCCCCC CCTTCTTTTCTTTTCTCTCTCTCTCTCTTTTTTCCCCCCCTCCCCCTCTT CTTTTTTCCTCCCCCCTTTTCTCCTCCTCTTTCTTTTTTTAATTCTCCTT CTTCTCCCCCTN
quality values	Open. Hide. 6 6 8 8 8 8 9 10 9 8 8 10 10 22 19 28 28 25 22 21 8 8 8 8 9 19 24 23 25 8 8 6 6 6 6 8 8 7 9 9 9 12 10 10 11 16 15 14 21 21 10 8 8 17 17 13 8 7 8 8 9 9 8 8 6 7 6 7 7 7 7 11 10 9 10 8 3 0 3 8 11 21 15 11 11 20 20 13 13 19 17 15 10 9 9 10 15 25 25 31 22 22 16 16 14 15 18 30 30 25 25 34 43 43 43 43 37 37 28 19 19 15 12 14 27 27 39 42 43 34 32 20 24 24 22 15 15 14 14 14 24 21 12 11 11 10 9 9 9 9 9 10 8 15 6 9 10 10 10 13 13 8 8 10 8 10 10 8 8 8 8 8 8 6 6 10 7 7 8 8 9 9 9 15 13 14 10 8 8 6 6 8 8 10 8 8 8 8 8 8 8 8 9 8 8 8 6 6 8 8 8 8 8 8 8 8 10 8 8 8 9 10 12 16 10 8 8 8 11 10 12 16 16 15 18 18 10 10 7 8 8 10 8 8 8 8 8 10 10 9 9 8 8 8 8 8 8 9 9 9 9 9 12 21 17 13 12 8 8 8 8 15 10 8 8 8 10 10 10 10 9 9 9 9 9 13 10 10 8 10 7 7 10 10 10 10 8 8 8 8 8 8 8 8 10 8 7 7 11 16 16 24 22 15 9 9 9 9 10 9 10 10 7 6 6 6 6 8 8 12 16 15 10 12 10 9 9 19 22 23 17 18 12 12 8 8 8 8 10 14 10 10 9 15 19 21 28 16 14 10 10 10 10 17 23 29 26 28 29 37 37 30 30 19 18 11 8 8 8 10 10 9 9 9 11 13 10 10 12 10 10 10 8 8 8 10 6 9 8 10 8 9 9 12 9 9 9 9 15 19 23 19 18 13 14 19 23 24 25 24 15 15 19 12 12 16 15 8 8 8 8 9 10 10 12 19 19 15 6 6 8 8 8 8 8 11 11 34 34 17 18 15 14 13 12 8 8 8 15 15 16 15 10 10 10 15 15 17 19 9 9 9 15 15 17 11 11 10 8 8 8 8 8 8 8 10 10 8 8 8 9 12 19 15 8 8 6 6 8 11 15 24 17 8 8 8 13 15 23 22 19 13 9 9 8 15 8 8 8 8 12 12 8 8 8 9 11 8 10 8 13 22 22 13 8 8 8 8 12 11 10 8 8 8 13 15 10 10 10 10 15 15 8 8 8 10 19 19 10 14 11 19 10 6 6 8 8 13 15 8 8 8 17 15 25 24 18 15 11 8 8 15 15 17 8 9 9 9 9 9 9 9 9 8 10 8 9 8 8 9 9 8 8 6 6 8 8 8 8 8 8 10 10 19 19 28 22 20 19 16 17 25 30 32 29 14 19 14 14 10 10 11 11 19 23 28 30 30 30 30 30 18 13 13 18 9 9 13 25 31 47 28 19 12 10 10 11 17 21 19 16 16 10 10 10 19 19 30 24 24 24 22 16 16 12 10 8 8 12 10 10 12 18 18 24 28 24 22 25 12 15 19 15 8 8 8 8 8 13 8 13 11 11 22 15 8 8 8 8 8 19 22 25 23 32 18 11 10 10 8 8 6 8 8 8 8 6 8 8 8 11 11 13 14 24 23 11 9 8 8 8 10 8 8 8 8 8 8 9 8 8 8 8 13 19 9 8 8 6 6	Open. Hide. 7 7 7 7 7 6 6 8 13 10 9 9 9 9 23 15 18 10 10 10 13 31 39 25 25 3 0 3 3 0 3 17 9 6 6 6 6 6 7 7 8 8 11 11 12 11 11 11 9 11 21 27 30 31 31 31 31 31 37 23 23 9 9 7 7 7 7 7 7 6 6 6 6 6 6 8 8 9 9 13 19 28 39 50 50 50 53 53 53 53 53 53 53 50 57 57 57 57 50 50 50 50 42 42 42 47 68 68 68 68 68 68 68 68 68 68 68 68 68 68 54 50 54 54 54 54 54 57 57 57 57 47 47 47 57 57 68 68 57 57 59 59 57 68 68 68 68 68 68 68 68 68 68 68 68 50 68 68 68 68 68 68 68 68 68 68 57 57 59 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 50 50 50 50 50 54 59 59 59 68 68 57 57 57 57 57 68 59 59 48 59 46 43 43 43 43 47 47 53 53 59 59 59 59 48 48 48 48 59 59 59 57 43 39 35 28 41 24 24 15 13 13 13 15 10 12 14 19 23 25 30 30 30 37 37 37 37 26 26 13 15 11 16 11 16 18 20 20 20 16 15 10 10 10 10 11 13 13 20 18 20 20 20 18 18 9 9 10 10 11 12 24 15 17 11 8 8 6 6 6 6 11 11 11 12 9 9 8 8 8 10 13 16 21 21 14 13 8 8 8 8 9 18 18 26 23 23 19 25 19 19 17 13 15 16 10 10 8 8 10 15 15 13 11 11 11 13 11 12 12 8 10 7 6 8 8 13 13 8 8 6 7 8 7 9 13 8 8 8 8 9 9 8 8 8 8 8 8 8 10 13 13 13 16 16 11 10 9 9 9 13 12 15 10 8 8 11 11 9 9 10 12 10 8 8 8 8 8 8 8 9 9 12 8 9 9 11 10 10 9 9 13 17 17 22 12 9 9 10 10 8 8 8 8 8 8 9 9 10 9 9 9 10 17 12 11 11 11 15 13 14 19 19 22 14 14 16 9 8 6 6 6 8 8 8 8 8 8 11 8 12 10 14 14 9 8 8 8 8 8 8 8 8 9 9 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 10 9 9 9 13 15 10 13 8 10 8 8 8 8 7 8 8 13 10 9 9 10 14 10 10 10 10 10 13 10 8 8 10 10 12 16 10 10 8 8 8 6 6 6 6 8 8 8 8 10 13 13 15 12 8 8 8 6 10 10 18 18 10 11 6 6 8 6 7 8 8 8 8 9 9 13 13 8 8 8 8 7 6 9 13 16 10 10 8 8 8 8 8 10 10 14 10 10 10 12 10 10 11 11 12 16 21 14 12 11 8 8 8 10 8 8 8 8 9 10 17 13 10 8 10 8 8 9 13 8 10 15 17 10 10 10 11 11 11 22 18 11 8 8 7 9 11 10 12 15 16 11 11 10 8 6 6 8 8 8 8 8 7 7 9 9 12 10 10 8 8 8 9 7 10 10 10 10 10 13 20 10 11 13 22 17 12 11 11 9 9 11 12 15 17 15 10 10 8 8 8 10 11 10 8 8 8 8 8 8 10 8 8 8 10 8 24 19 20 15 17 10 10 14 23 21 29 17 15 10 9 9 12 10 14 8 10 10 13 12 10 10 10 10 18 12 8 8 8 8 12 19 22 27 14 10 10 17 19 21 20 28 15 13 6 6 6 8 8 10 8 7 6 8 8 12 10 12 8 8 8 8 9 10 9 9 8 9 9 11 9 10 13 13 10 10 10 10 10 18 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no442_k06.g1 MSMg01no442_k06.g1 CHROMAT_FILE:
MSMg01no442_k06.g1 PHD_FILE: MSMg01no442_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:54 2005
         (192 letters)



>mm_chr12_74408651_74409242
          Length = 592

 Score =  335 bits (173), Expect = 1e-96
 Identities = 173/173 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgaatatgcagtttaagctcacagctgtatctaataagatgtaagtgtggccatcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attgaatatgcagtttaagctcacagctgtatctaataagatgtaagtgtggccatcatt 260

                                                                       
Query: 61  gagaaagacagaaaccgtgaccggcattgctgatgagtcaccattatgtctgactagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagaaagacagaaaccgtgaccggcattgctgatgagtcaccattatgtctgactagaca 320

                                                                
Query: 121 gtgactaaagggggaaaggctcagagaatgggggtgtttatcattggaaaacc 173
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgactaaagggggaaaggctcagagaatgggggtgtttatcattggaaaacc 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 592
Length adjustment: 8
Effective length of query: 184
Effective length of database: 584
Effective search space:   107456
Effective search space used:   107456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information