BAC Information

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BAC

Clone NameMSMg01-442P09
Chromosome12 (Build37)
Map Location 90,356,782 - 90,357,310
singlet/doubletsinglet
Overlap geneNrxn3
Upstream geneLOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442P09.T7 (MSMg01no442_p09.b1)MSMg01-442P09.TJ (MSMg01no442_p09.g1)
ACCAG532481AG532482
length798768
length of high quality
(start - end)
458 (49 - 506)529 (79 - 607)
definitionCHROMAT_FILE: MSMg01no442_p09.b1 PHD_FILE: MSMg01no442_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:23 2005CHROMAT_FILE: MSMg01no442_p09.g1 PHD_FILE: MSMg01no442_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCG
CGGAATTCTTTGTTCTGCTCTGAGACATGTGGATCTTACAACCCTTGTAT
CACCCCACCCCCATTTTAAGACCATCTATGAGCCTTGGAAGGCACAGTGT
GATGTTAATGTCCCATTTATAGTTGAGCACTCTACAGATTCTTATTTGAC
CAGTTGTAAGTTTCTGCACGGACTGCTGTTTACTCTGCAAGAAAACCTTA
AAACTGATGAGTTCTAAGTGCACACTAACCTATGGGTAGAGAGGTAAGAA
TTTAGAGGGTATTCTGACTCTATTTGTATTTAGCAAAATAGTAGTATTAG
CTTCACCCCCAAGCCTGTGAGCTTTCCAACCTTGGGTTCTTGTCCAGATT
CAAGGTGCCAGGCATGTGTTGCTTCCCGTGGAGTAGGACTCTTCAGTCAG
GATGTGGATGATGTCCCCCATAACATTTGTGCTACTTTCCCACCCATATT
TTACCATGTTGGTCATTATTGCACCTTATGGGTTTTGAGCCGGATAAATC
TGTTGAAGAATTTTCCTCCCCCCACTCTCAATCCTAATCCCAAGCATTCT
TGTTTTCCTTCTTTCTGTATTTTTACACTCTGTCATTCCCCCCTCATACT
TTTTCTTCCCCCCCTCCCTTTTTTCTTTTCTTTTTTGCCTTCCTTTTTCA
CTTTTTTTCCCCCTCCTTTTATTCCTCCATTTTACCTCCTCTTTTTTTTT
TTTGCCCCCCCCTTCTTTTCTGTCTTTCTCCCCCTTTCCCTCCTCTTG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGAAGGAACTTCATGAAAT
TTATGATGGCTGTTAACTTCTCTGACTAGGTCTGAGTATTTGTGATAACT
GATGCTGTCTTTGCATTGGTCTTATTTATTCAACAGACATTTACTTAAAG
CTTCCTGTATTGTGTATTATATCATGCTGATGGATATTCTCTTAATAATA
ACAATTTAGCAGACGGCACTTCCTGATGATAAAGTGTCAGCATGACTGCT
TCCCCCCAAGGGTAGCAACTGAAGCAGTAATGGGGGAAAGAATGGAGGTG
GGAGAAGAGAGCACGGCATGAAATTGCAGATGTGCTTTTTTAAACGCAGC
ACAAGCTGACTGACAGATGCTTAGATCCTGAGCTCCCTAAACTCTGGGTC
TTCAAAATCCTCAATATCTCCCTCAAGACAGTTCCACAGATCCACTGGAT
CACCTAGAGATATGATCTGCCTCTCACTGGTGAAGGCACACTTGTTTTCT
ATACCCCAGTGTTACAGGTCATGGGCAAGATGATGGGAAAATTAATAAGC
ACTTTATAGAAGACAAATATTATATCTAAGAAAAAATACTAATGTTGACG
ATATTTAAGTACTGCTAGGGGGCTAGGGGTAGTCTCACAATGAACTGAAT
TCTGGGATATGTGGACCTTTTAAAAATGATTCCCATTAATTTTTAAATTG
GGCCGCGCCGCCATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_p09.g1 MSMg01no442_p09.g1 CHROMAT_FILE:
MSMg01no442_p09.g1 PHD_FILE: MSMg01no442_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:24 2005
         (529 letters)



>mm_chr12_90356582_90357510
          Length = 929

 Score =  992 bits (513), Expect = 0.0
 Identities = 525/529 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctagaaggaacttcatgaaatttatgatggctgttaacttctctgactaggtctgagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tctagaaggaacttcatgaaatttatgatggctgttaacttctctgactaggtctgagta 670

                                                                       
Query: 61  tttgtgataactgatgctgtctttgcattggtcttatttattcaacagacatttacttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tttgtgataactgatgctgtctttgcattggtcttatttattcaacagacatttacttaa 610

                                                                       
Query: 121 agcttcctgtattgtgtattatatcatgctgatggatattctcttaataataacaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 agcttcctgtattgtgtattatatcatgctgatggatattctcttaataataacaattta 550

                                                                       
Query: 181 gcagacggcacttcctgatgataaagtgtcagcatgactgcttccccccaagggtagcaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gcagacggcacttcccgatgataaagtgtcagcatgactgcttccccccaagggtagcaa 490

                                                                       
Query: 241 ctgaagcagtaatgggggaaagaatggaggtgggagaagagagcacggcatgaaattgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ctgaagcagtaatgggggaaagaatggaggtgggagaagagagcacggcatgaaattgca 430

                                                                       
Query: 301 gatgtgcttttttaaacgcagcacaagctgactgacagatgcttagatcctgagctccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gatgtgcttttttaaacgcagcacaagctgactgacagatgcttagatcctgagctccct 370

                                                                       
Query: 361 aaactctgggtcttcaaaatcctcaatatctccctcaagacagttccacagatccactgg 420
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct: 369 aaactctgggtcttcaaaatcctcaatatctccctcaagaccgttccacagaaccactgg 310

                                                                       
Query: 421 atcacctagagatatgatctgcctctcactggtgaaggcacacttgttttctatacccca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atcacctagagatatgatctgcctctcactggtgaaggcacacttgttttctatacccca 250

                                                            
Query: 481 gtgttacaggtcatgggcaagatgatgggaaaattaataagcactttat 529
           |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 gtgttacaggtcatgggcaagatgatgggaaaattaatgagcactttat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)