BAC Information

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BAC

Clone NameMSMg01-443C08
Chromosome12 (Build37)
Map Location 62,893,874 - 62,894,220
singlet/doubletsinglet
Overlap geneLrfn5
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC665707, LOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443C08.T7 (MSMg01no443_c08.b1)MSMg01-443C08.TJ (MSMg01no443_c08.g1)
ACCAG532622AG532623
length725758
length of high quality
(start - end)
356 (53 - 408)347 (81 - 427)
definitionCHROMAT_FILE: MSMg01no443_c08.b1 PHD_FILE: MSMg01no443_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:39 2005CHROMAT_FILE: MSMg01no443_c08.g1 PHD_FILE: MSMg01no443_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAGAATCCG
CGGAATTCAGGAACTNCTCCCCTCAAGGACACTGCACTCACTGCACTGAC
TCCCAAGTCCCTGACTCTCTCCCTGTGCTGGTCTTAAATAGTTTCTCTTT
CTTGTGCTGTTCTCCTGAGAGTTGGGAGTATAGCATGTCTGCCCCTTTTT
GTCAGATCTTTCTCTGATTTGTCATTTTGTCTGCCTCTCAATAAATGTCA
CTTTCAAACATAGCTGCTTGTTCCTGCAAACTAACTTTACCTTCATTGTT
CAGGATTAAAGATGTGCATTGTACTATTTACGTGTCTGTATTCTAGCCAG
AGAAGCATCATGGTTGGACTGAAATTCCCTTACGTCCTCTCTGTTTCTGT
TTAAGCTAAAAATTGTATACCGCGAACTTCGGCATATTATACTTTCATCA
CTCCCACAATCTTAACATTATGACTGCCCTATTGATGACCTTTTGATAGG
ATGACCTCTCACAACTGCAGTTTTGACCGTATGTCATTCATCAAATGCTC
ATGTCCATTTCTTGGTTTTCCAGTCTGCCCTTCCGATGATTGATCTGCCC
TTTTTCCCTCAAGTTGTTGATTTGTCTCCACCGAAGCAGGTCATTTTTGT
CCTTAATGCTTGCACGTTGCCCTCCCGCCTACTCTCCCTTTCTTGGATAC
ACGCTTTTTCACTGTGCTCTTTCCN
TTTCTCGATGATAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAAACTCATTACTTTACT
TGAAAGAAAATTACAGATGGCATTACAACATGAACTTTAAAATAGATTAT
TTCTCCTTGAAATTAATAGAACTTTTCACTCTTAAAAATCTAAAAGAAAG
ACAAGAAGAACAAAGACAGTTGTGACTTTGCAGGAAGTACCAGGAGAGGT
TTGAAGCCTGTGATATCAAAAGCACACTGATTTAAAAAATGCAAACAGAG
GAGCATCAAGCAATAAACACAAGTTTGCTCAAAGAACTAGAGTGATATTC
ACCTGACTTCTCTTCTTCTTTTGTAGGGATTTCTGTTGTTTAATTTATAT
TATTACACAGTACTGAAATATTTTACAATCACATGACTTATTTAAATACT
TATTTTTTCCTGAGCAGATATTATAGATTTGGGCGATTTCAAATCGCATC
ATTTCACTCAACATTATATTATTTGCCCACACAAAACCCTACTTTATTTG
GCTGACAGACATATATATGTTTTCTCGTATAACCGGAGTTCATACCTATG
TACCTCTAACCACACAGTCCTAATGCATTGCTTTCTCGCCCCCCCTTACA
CTTATTAAAGGGCTTCTGGCCGATTTTCCCCCTCCATTTGGCTTTCAACG
TAAAGTCATTTTCTTTTTTGCTCATATCCCCCATATTCATTTTTCCCTGT
AATATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_c08.g1 MSMg01no443_c08.g1 CHROMAT_FILE:
MSMg01no443_c08.g1 PHD_FILE: MSMg01no443_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:39 2005
         (347 letters)



>mm_chr12_62893674_62894420
          Length = 747

 Score =  632 bits (327), Expect = 0.0
 Identities = 342/347 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataaactcattactttacttgaaagaaaattacagatggcattacaacatgaactttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 547 cataaactcattactttacttgaaagaaaattacagatggcattaaaacatgaactttaa 488

                                                                       
Query: 61  aatagattatttctccttgaaattaatagaacttttcactcttaaaaatctaaaagaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aatagattatttctccttgaaattaatagaacttttcactcttaaaaatctaaaagaaag 428

                                                                       
Query: 121 acaagaagaacaaagacagttgtgactttgcaggaagtaccaggagaggtttgaagcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 acaagaagaacaaagacagttgtgactttgcaggaagtaccaggagaggtttgaagcctg 368

                                                                       
Query: 181 tgatatcaaaagcacactgatttaaaaaatgcaaacagaggagcatcaagcaataaacac 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgatatcaaaagcacacttatttaaaaaatgcaaacagaggagcatcaagcaataaacac 308

                                                                       
Query: 241 aagtttgctcaaagaactagagtgatattcacctgacttctcttcttcttttgtagggat 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aagtttgctcaaagaactatagtgatattcacctgacttctcttcttcttttgtagggat 248

                                                          
Query: 301 ttctgttgtttaatttatattattacacagtactgaaatattttaca 347
           | ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 247 tactgttgtttaatttatattattatacagtactgaaatattttaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)