BAC Information

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BAC

Clone NameMSMg01-443D12
Chromosome12 (Build37)
Map Location 114,145,722 - 114,145,991
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
Downstream geneJag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443D12.T7 (MSMg01no443_d12.b1)MSMg01-443D12.TJ (MSMg01no443_d12.g1)
ACCAG532677AG532678
length761743
length of high quality
(start - end)		273 (54 - 326)---
definitionCHROMAT_FILE: MSMg01no443_d12.b1 PHD_FILE: MSMg01no443_d12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:45 2005CHROMAT_FILE: MSMg01no443_d12.g1 PHD_FILE: MSMg01no443_d12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATCCCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATGC
GCGGAATTCATTTTTGCTGACCACTGTCCCATTTCATAAAGCCCTCTCTT
TAGTTAGGAGGCCAGGTACACACATTCCCCAAACCTTACTCCCCAGGAGG
GTTCCACTAAACGGGTGTCAACTACTACAGTAGGACTCCAGCAGTGCCTG
AGGCCCAAGTCACCCACTGCGCTGAGGTCAACAGAACCACCTGACCTCTT
AAGACCCCACATCAACATGACTCAACCCTCAGGCCATGTCCCACTTCCAC
CTATGTCCCAACTGCACATGGAGTATTTGTTCAGAACCCAAAGAACAGGG
AGGCCAAAACGTTTAAGTTATTAAATCAAATATACCGAGTGATTCATTTA
ATATGTACATATTTACAGAAACGTACTTTCACAAGGAGGGTGGCCGGGGC
CGGCAGGCGGGCAGCGGCCTGGTGCCCACGGCAAACGCTGACAGCTGGGA
GGGGTTCTGCGTGAAGGCACTTGTCACAAGCTTCAATACTGCCGTTTTCC
CGGTATCGAAACCGAGCAGTTGTTAACGGCACTTCCTTATTTTCCCCTCG
TGCCATTTTTTGTTAGAGTTCTGTGCCCCTACCCCCCCCCCCGTTTCTCA
CCTTCCCCCGCCGTTCATTCCTTTTGTTTTTGTTCCACCGATCAATTGGA
CTCTCCCTTCTACCCCTTACCACTATGATCTTTTCCACACTTTTTTCTTT
CCTTGCCCCCG

TTCAACATGATAGGTTAGCCTGGCGGNCGNCGGNTTTTCAAAATGGGNGA
ACTATAGAAGGATTGCGAGAATTCAGGTGAGATGGAGGCTAGAGGAAGAA
GCGAGGCTTGCATGATATTTCTACCGCAAGCCATTGCTTCAGGGCTGAGC
CTCCCGTCTCCCCACGCCTCCCCACCCCCACCTCCCAGTACTGGTACCTT
TACAGAGATACTGAGCTGCGTACTCAGAGGGTGGCGGCAGGAACCAACTT
GATCGTAGAGGCAGGTCCCCCAACTGACAGCAATGACCAATGGCAACTGG
TGTCGCTTGACCGCGACCTTTTTTTTTGGCACGCTCTGAGGGTGATGCCT
CACAGCTAATGTCTGTCTTATGCAAACACACTCTGCGGTTCGTACCACTG
CACTGCCTGCCATGCCGCCTTTGGTGTCATTCTTCAAAGCCACCAATCGC
TTTTTCTTGCATTCCCCTTACAGCCTCATGACGTACTCTCGTAAAATTTT
CCTCCCCCCCCACTTTTGTTTTTAGTGACGCATATCCGACCCACCCCCCG
CCCCCCTTTTTATGCCCCCTACCCCCGCCTTTTTTCCTCTTTCGCCCTCT
TCCCCCTCCCTCCTTCCACCTCCTCTTCTATCTTTATCTCCCCCTCTTAT
CTCCAAACTCTCCCCTTTTCCTTCCGCCATTTCTCCCCCCTCTCTTTTTC
TCTTTTTTATTCCCCCCCTTATTCCGCCCCCTTAACTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_d12.b1 MSMg01no443_d12.b1 CHROMAT_FILE:
MSMg01no443_d12.b1 PHD_FILE: MSMg01no443_d12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:45 2005
         (273 letters)



>mm_chr12_114145522_114146194
          Length = 673

 Score =  507 bits (262), Expect = e-148
 Identities = 268/270 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattcatttttgctgaccactgtcccatttcataaagccctctctttagttaggaggcc 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattcatttttgctgagcactgtcccatttcataaagccctctctttagttaggaggcc 260

                                                                       
Query: 61  aggtacacacattccccaaaccttactccccaggagggttccactaaacgggtgtcaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtacacacattccccaaaccttactccccaggagggttccactaaacgggtgtcaact 320

                                                                       
Query: 121 actacagtaggactccagcagtgcctgaggcccaagtcacccactgcgctgaggtcaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actacagtaggactccagcagtgcctgaggcccaagtcacccactgcgctgaggtcaaca 380

                                                                       
Query: 181 gaaccacctgacctcttaagaccccacatcaacatgactcaaccctcaggccatgtccca 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 gaaccacctgacctcttaagaccccacatcaacatgacccaaccctcaggccatgtccca 440

                                         
Query: 241 cttccacctatgtcccaactgcacatggag 270
           ||||||||||||||||||||||||||||||
Sbjct: 441 cttccacctatgtcccaactgcacatggag 470


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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