BAC Information

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BAC

Clone NameMSMg01-443G10
Chromosome12 (Build37)
Map Location 39,028,355 - 39,028,798
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneA530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443G10.T7 (MSMg01no443_g10.b1)MSMg01-443G10.TJ (MSMg01no443_g10.g1)
ACCAG532816AG532817
length724733
length of high quality
(start - end)
77 (124 - 200)444 (80 - 523)
definitionCHROMAT_FILE: MSMg01no443_g10.b1 PHD_FILE: MSMg01no443_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:59 2005CHROMAT_FILE: MSMg01no443_g10.g1 PHD_FILE: MSMg01no443_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCTCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATAGAATCC
GCGGAATTCCAGACTCTCGCCTTTAGCTCATCTACCAGNTTACTCTCAGC
TAACCTCGACATAGGCACCTACATATTCTTGCTTCAAGCAACTGTTTGCT
GTGGGTGGTATAGTGTGTAAATACAAATAAAAGAAGTGTAAATGAAATAG
ATGGCAGATACTGTGAGGACAGCCTGTATTAACATCATAAAAGCTTCTGT
AATATCCTTCTCTATCTATCCTATAGTATAGAGTATTGTATAATTATTAT
GACAGGATGTAGAGGTAGAATTTTTTTTTTACATACCACGCTAGATGCTA
TAGCTCTGTGGAATGAAATATATTGCCCCACTAATAATAACTATATTCAC
AAAGCGCCATGCGTTTTATCGGAACAAACTTCTTTTGCCAAGTACAGGAA
TCCCTGTATGTTTGCATTATACTGACCCTTTTATGATATATAACGTCCCA
TTGGCATCGCCCGCACAGATTTTACACCTTATTCACATTTTCTTGTTGTA
TACATGTCTATTATTATTGTTTGCTGCCTCGTTCTTTTCACCTCCCCGAT
TGGCTTTGCCTTTTTTATAATGGTGCCCTCCCTTCTCCTGACATTTAATT
CTTTTTTTTTATCCGCTTCACTCGCCGCTTTATTTTCCTTTTCTGCATCC
CCTATTTTTCCCTTCTCTTTTCCC
TTTCTCGATGCTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATGGGTGGTTCATAGATGCT
ATAAGATATAGCATTTTAAAGAGGACACCTTGCTGTAGGGGGCACCACAT
TGGTTTAGCATATGGCCTTTCATGGCTACCTGAAGGGACAGGATAAAAGA
GTTATGGAATCCACAGAAAGTTTCTAATGGCAGTGAAAATAATCAAAATG
CCCCAGAAATCTATGTAAGCTACAAAATAAAAATATCTGCCAAAACGTTT
ACTTACTGGATGTATATAAATTCTTTATTTTAATCTGGGTCAGATTTTTA
CATAGACAATTGAATATTTCAGAATCATCAGAAGGCTCAGAGGGGTTATT
TCATTTAAATACTAAATGTGTTCTAGGAAACTTTCAGAGCCTGAATGCCA
TTCTTGAAGTCTTGAGGGTCAGCTAATGAGGTAATAAGTTTCAAAATGAA
AAATGACATGGCTGTGATCCAAGGCGACACACACCTATAATCCCAGCTCC
TACTGAAGAGGAGAATCCCGAATCTAAGGCTAGGCTTACCTAAATAGAAA
GGTTGACACCCAACCTGAATATGTCATAGCCCCTTTCCCAATAATGAATA
AATTGCCTTGATACAAAGCTCCCCGCATTAACAATGCATACTGGTTCTTT
TGCGAACAACATATCTTGTTGTCCTTTCTATCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_g10.g1 MSMg01no443_g10.g1 CHROMAT_FILE:
MSMg01no443_g10.g1 PHD_FILE: MSMg01no443_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:00 2005
         (444 letters)



>mm_chr12_39028155_39028998
          Length = 844

 Score =  735 bits (380), Expect = 0.0
 Identities = 428/444 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatgggtggttcatagatgctataagatatagcattttaaagaggacaccttgctgtagg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tatgggtggttcatagatgctataagatatagcattttaaagaggaaaccttgctgtagg 260

                                                                       
Query: 61  gggcaccacattggtttagcatatggcctttcatggctacctgaagggacaggataaaag 120
           |||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||| 
Sbjct: 261 gggcaccacattggtttagcatatggccttccatggatacctgaagggacagggtaaaat 320

                                                                       
Query: 121 agttatggaatccacagaaagtttctaatggcagtgaaaataatcaaaatgccccagaaa 180
           | ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttatggaatccacagaaaggtcctaatggcagtgaaaataatcaaaatgccccagaaa 380

                                                                       
Query: 181 tctatgtaagctacaaaataaaaatatctgccaaaacgtttacttactggatgtatataa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tctatgtaagctacaaaataaaaatatctgccaaaacgtttacttattggatgtatataa 440

                                                                       
Query: 241 attctttattttaatctgggtcagatttttacatagacaattgaatatttcagaatcatc 300
           |||||  ||  ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 attctccataataatctgggtcagatttttacatagacaattgaatttttcagaatcatc 500

                                                                       
Query: 301 agaaggctcagaggggttatttcatttaaatactaaatgtgttctaggaaactttcagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaggctcagaggggttatttcatttaaatactaaatgtgttctaggaaactttcagag 560

                                                                       
Query: 361 cctgaatgccattcttgaagtcttgagggtcagctaatgaggtaataagtttcaaaatga 420
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct: 561 cctgaatgccattcttgaagtcttgagggtcagttaatgaggtaataagtttcaaagtga 620

                                   
Query: 421 aaaatgacatggctgtgatccaag 444
           ||||||||||||||||||||||||
Sbjct: 621 aaaatgacatggctgtgatccaag 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)