NATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCATTAAATCTCAAGGAAAATGTAGGATTGAAATGTCTATACAG
CTGTAGGTTTGGACTGCTATTGGAAACTGCGAACCTTTGGGAGCACTTCA
GAGTTGGGTGGGTCATGTTTCCAACAAACTTTTTTCTAATTAAGTCTTTG
GAGCTGACTGTACAGTGTGAAACTAGCCGTGCCCATCACTCCTTGGACTT
TTCCTGCCTTAAATTTCCAGATGGAAAACTTTAGCAGGAAACCACACTTC
TTTAGAGTCTCAGCTGTTATTAATTTGCTAATCACTGTGGGCTTATCGTG
ATTTCCTATGAAAATATTTTCTCTTCCAGAACAGTTCCCTGAGAGTGACT
TGGCTCAGAGTCTGCAACAAATGTATGTTGAGCGTGTTTGAATGAACACT
TTGACTGCTACTGTTAGAAAATCTTTCTTTCCCAATGACACTCCCGTAAG
TATAAAACCAGNCCCCAGAGCCAGATGATTACTTTCAGTTCAGAATCCAG
GTTGAGAATTCTATAGGTGGCCCATTCCTCTTTAAAAGGTACGACCCACA
TCCTCATGCCAGCTTTGTGGAAAAATAACCGCCCCTCAGATTAATGATAA
TGTCCTTTTAATTGGGCCAAAAAAACAAACCCCGAGCCTCAAAAATGACC
CCCCTGTTTTATCTTCATGCTGTATAAAATAACGGTAGAAN

NTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGGAAACAGATGACAGTGTT
TTTGCCCTCTTCCTCACCCAAGGACCCCCCTGTGTCTTTTCTCACCTTCA
ATCCAGTGATCAGGTAGAGTATATAATTTTAAAGAGGCTATAAGGTTGGA
CTCTGGACCAGAAGTATGGATCCTTACTGCCTACTAGCTTGTTCAGATAC
AGTGGGCAAAAATCACCTACTTCTAGGTTGGGCTAAGCTAATAATGTTAG
CTCTGATCACATCTGACAAATCCTCTACTGGCTTCCAGTCAATGAACTTA
AAGATCAAGTGGCAGCAGGTATGTTCTGTGAGTCCAGTGGAACAATTAAA
TAAGCATGGTTAGTAGCCCTGTGCTCTCACTGATGGTCTGGCATGCCTTA
TGAAGAGACAGCACCAGGTCTTGTGACTGTGTCTCACTCACAACATAGTT
ACAAAGCCATACTCCACGGGTGCTTTTGACAGAGATACTGGAAGGGGACA
ATAGTGGATTTGTCTCGCTCAATTTTGTTTGTTCCTCGGTTACACGGTAT
ACATAGCCCTCTAACGGAACCCGGTCCAGGTAGGAAATTTACTTTGCCTC
CCCCTTTTCATTTTTTGTTCTCTATCGCCCATTTTTCGCTGCCTCTTTCC
TTTGACAATTTTATTTTCTAATTTCTCAATCCCCTTTTCTTTTGTCCCTT
TTTTAT

Query= MSMg01no443_g20.b1 MSMg01no443_g20.b1 CHROMAT_FILE:
MSMg01no443_g20.b1 PHD_FILE: MSMg01no443_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:01 2005
         (240 letters)



>mm_chr12_91647089_91647728
          Length = 640

 Score =  445 bits (230), Expect = e-129
 Identities = 236/238 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   gattgaaatgtctatacagctgtaggtttggactgctattggaaactgcgaacctttggg 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gattgaaatgtctatacagctgtaggtttggactgctattggaaactgcgaacctttggg 381

                                                                       
Query: 63  agcacttcagagttgggtgggtcatgtttccaacaaacttttttctaattaagtctttgg 122
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 380 agcacttcagagttgggtgggtcatgtttccagcaaacttttttctaattaagtctttgg 321

                                                                       
Query: 123 agctgactgtacagtgtgaaactagccgtgcccatcactccttggacttttcctgcctta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 agctgactgtacagtgtgaaactagccgtgcccatcactccttggacttttccagcctta 261

                                                                     
Query: 183 aatttccagatggaaaactttagcaggaaaccacacttctttagagtctcagctgtta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aatttccagatggaaaactttagcaggaaaccacacttctttagagtctcagctgtta 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no443_g20.g1 MSMg01no443_g20.g1 CHROMAT_FILE:
MSMg01no443_g20.g1 PHD_FILE: MSMg01no443_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:01 2005
         (424 letters)



>mm_chr12_91469154_91469977
          Length = 824

 Score =  774 bits (400), Expect = 0.0
 Identities = 418/424 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatggaaacagatgacagtgtttttgccctcttcctcacccaaggacccccctgtgtct 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 201 tcatggaaacagatgacagtgtttttgccctcttcctcaccaaaggacctccctgtgtct 260

                                                                       
Query: 61  tttctcaccttcaatccagtgatcaggtagagtatataattttaaagaggctataaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttctcaccttcaatccagtgatcaggtagagtatataattttaaagaggctataaggtt 320

                                                                       
Query: 121 ggactctggaccagaagtatggatccttactgcctactagcttgttcagatacagtgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactctggaccagaagtatggatccttactgcctactagcttgttcagatacagtgggc 380

                                                                       
Query: 181 aaaaatcacctacttctaggttgggctaagctaataatgttagctctgatcacatctgac 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 aaaaatcacctacttctaggttgggctaagctaatcatgttagctctgatcacatctgac 440

                                                                       
Query: 241 aaatcctctactggcttccagtcaatgaacttaaagatcaagtggcagcaggtatgttct 300
           || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 aactcctctactggcttcaagtcaatgaacttaaagatcaagttgcagcaggtatgttct 500

                                                                       
Query: 301 gtgagtccagtggaacaattaaataagcatggttagtagccctgtgctctcactgatggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgagtccagtggaacaattaaataagcatggttagtagccctgtgctctcactgatggt 560

                                                                       
Query: 361 ctggcatgccttatgaagagacagcaccaggtcttgtgactgtgtctcactcacaacata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggcatgccttatgaagagacagcaccaggtcttgtgactgtgtctcactcacaacata 620

               
Query: 421 gtta 424
           ||||
Sbjct: 621 gtta 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 824
Length adjustment: 9
Effective length of query: 415
Effective length of database: 815
Effective search space:   338225
Effective search space used:   338225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)