Query= MSMg01no443_h19.b1 MSMg01no443_h19.b1 CHROMAT_FILE:
MSMg01no443_h19.b1 PHD_FILE: MSMg01no443_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:06 2005
(460 letters)
>mm_chr12_16081716_16082575
Length = 860
Score = 855 bits (442), Expect = 0.0
Identities = 454/458 (99%)
Strand = Plus / Minus
Query: 1 gcctctgcagcctgatgcccgagggagaacatctttattcctgggtttctattacagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gcctctgcagcctgatgcccgagggagaacatctttattcctgggtttctattacagacc 451
Query: 61 agaggagtcccaggacacccctccacccctcctagcctggattacttttctctaattgtg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 450 agaggagtcccaggacacccctccacccctcctagcctggatttcttttctctaattgtg 391
Query: 121 ggggttagttctaaacggtgcctagaggggccaccaaatgaacacagtccaaccgtaagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 390 ggggttagttctaaacggtgcctagaggggccaccaaatgaacacagtccagccgtaagg 331
Query: 181 aaaccaagaatgacccgcattaggctttgcaggcctctgtagtctgtggaaaacattgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 aaaccaagaatgacccgcattaggctttgcaggcctctgtagtctgtggaaaacattgct 271
Query: 241 tttaaacttttgtttttatttttgttttattgagatgtattttactttttaaaaataacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 tttaaacttttgtttttatttttgttttattgagatgtattttactttttaaaaataacc 211
Query: 301 ttcatgaatatctttgtttttcttggatattttctttctttacatttcaaatgttttcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttcatgaatatctttgtttttcttggatattttctttctttacatttcaaatgttttcct 151
Query: 361 ctttccaggtctcctcttcagatactccctattccatcccctgtccccctacctctatga 420
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 150 ctttccaggtctcctcttcagatactccctattccatcccctctccccctgcctctatga 91
Query: 421 gggtgctccacccatccactcccatcttctcactctgg 458
||||||||||||||||||||||||||||||||||||||
Sbjct: 90 gggtgctccacccatccactcccatcttctcactctgg 53
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space: 382500
Effective search space used: 382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no443_h19.g1 MSMg01no443_h19.g1 CHROMAT_FILE:
MSMg01no443_h19.g1 PHD_FILE: MSMg01no443_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:06 2005
(450 letters)
>mm_chr12_15923598_15924447
Length = 850
Score = 841 bits (435), Expect = 0.0
Identities = 447/451 (99%), Gaps = 2/451 (0%)
Strand = Plus / Plus
Query: 1 catggtaaacagagagaatttacaggctacctagacatccctttcagaaatgatctagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggtaaacagagagaatttacaggctacctagacatccctttcagaaatgatctagac 260
Query: 61 atattttatttctgtttttttttt-catttgttcagataccatatgaagaccatgaaagg 119
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 atattttatttctgtttttttttttcatttgttcagataccatatgaagaccatgaaagg 320
Query: 120 aaacggaaaaatacaagaataagataaggaatggaaggagaggcagaaaccaggagtttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaacggaaaaatacaagaataagataaggaatggaaggagaggcagaaaccaggagtttg 380
Query: 180 aaacactgagagccagtatgagactttgctctgtctctgtccttgagcaatgaatgatac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacactgagagccagtatgagactttgctctgtctctgtccttgagcaatgaatgatac 440
Query: 240 agcagaggtctctgactcaaaccccatggaaaaatgaacaaaggaataaggagaaagaac 299
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcagaggcc-ctgactcaaaccccatggaaaaatgaacaaaggaataaggagaaagaac 499
Query: 300 ctaagtaccaaagcctggtgttacttctgccatagtatgaaactgttagagtatcccagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaagtaccaaagcctggtgttacttctgccatagtatgaaactgttagagtatcccagg 559
Query: 360 gctaagatttctgaccagcccccacacccatctctataaccctctgggccactacatgat 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 gctaagatttctgaccagcccctacacccatctctataaccctctgggccactacatgat 619
Query: 420 gactgctggattgtgggaaggaggtggaacc 450
|||||||||||||||||||||||||||||||
Sbjct: 620 gactgctggattgtgggaaggaggtggaacc 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
