BAC Information

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BAC

Clone NameMSMg01-444G06
Chromosome12 (Build37)
Map Location 118,959,317 - 118,959,492
singlet/doubletsinglet
Overlap geneRapgef5
Upstream genePtprn2, LOC432713, LOC100042461, A930023M06Rik
Downstream geneCdca7l, Dnahc11, Sp4, LOC100042993, LOC668611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444G06.T7 (MSMg01no444_g06.b1)MSMg01-444G06.TJ (MSMg01no444_g06.g1)
ACCAG533569AG533570
length782759
length of high quality
(start - end)
171 (72 - 242)171 (80 - 250)
definitionCHROMAT_FILE: MSMg01no444_g06.b1 PHD_FILE: MSMg01no444_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:17 2005CHROMAT_FILE: MSMg01no444_g06.g1 PHD_FILE: MSMg01no444_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGCAAATAACGCGGATT
CTAATAGCAAGTTTCCAGATCTTGATTGGGCCACTGAGACTGTCCTGAAG
CAGAGTGTAAAATAAAAATGTATATGCTAGACATTTTAATATAGTGCTTT
AGGAGTTCTTAACTCTGAGGAGGAGTTCAAAAGTACAGTCTGTGGAGCGT
GGTCTCCAGTGTCTTCTAGCAGAGAGTCTATCACAAGAACGATATGGTGT
ATCCTAGGGATTCCTTGCATTATGGGAAGCCAGTCAGCTGCTCCTGCTTG
GTCACTGGCCTCCTGTCTTTGTTTTTTTTACCTTGCACTCTGTACTCTCA
CTTACTCTTCCTATTTGCATCCACTTGCTTACTCTCTATTATTACCATTC
CAGTTAGGTAGACTTCTCTTGTTCTTTTTTCTCTGACTATGAACTTGTTC
TCTTGCCCCTTTGCTTTCCCTCGCCTTGTGTACATTTCTCTTTCTCTCCT
CCTTTTTTTGTCAACTTCTTATTTGTCTATTCCCTTTCTTTTCTATTCTT
CTCTGCCTTTTTTCTTCTACCCTTTATTTTCTTTCTATACCCTTTTCCCC
CCCTTCTTCCATCACTAACTCCTTTTCCTTTTCCCCCCCTTCCCCCTTTC
TTATCTTTTCCCTCCCTCCCCCTTCCTCCCTATTTTCTAACCGTCGTTCT
GCCTCCTTTCTGCTTTTCACCTCTTTTTTCCTTTCTTCCTCACCTTCTCC
TTTCCCTTTCCTCTCCTTTTCCTCTTCCTCTT
NNCCCCGATGATAGTGGTAGGCCTGGCGGNCGCCTGGTACAGACGTGGAG
GNGACACNANAGAAGTACAAGCAGAATTCCAATCCTAGACTATGCACAGT
GAGACCTTGTCTCAAAAATCTACTACCACAGTGGGGCAGTGACAGTGCAT
GCTGTTAACACAAGCTCTGAAGAGGCAGATCTGTGAGTTTGAGGCCAGCC
TGGTCTACAGAGGTAGTTCTAGGACAGCCAGGGCTATACAAAGAAACCCT
ATTTCTTAAATGAGAAAAAAAAAGAAAAGAATAGAAAAATCAACTATCAG
GAAGAGAAAGGAAAAAATTTTTTTTTTTCAGGGGCAGCGAGGAGAGANGA
AACCCACACCTATTGTTCACGACTCTCTATTGATTGAGAGTGGTCTGCAG
TGTTCAGGTGAGACAGCCACACCACACTGCACACTACCCTTGATGCCACT
CAAAATGGCTACAGTGGCTTGCCCTACTTTATGTATCCTTTTACTACCAT
TATTTAACCCTTACCATGTATTTCTCTTTCCTTTCTCCCATTCTTTCTCT
TCTCCTTCCCTTTCTCCTTCCTACCCTTCTTCATTCCCTTTTTTCTATCC
TTCCCTTTTATTCCTCACTTCATGCCCCCATAACCTATTCTTTTTCTACC
TGTCTTCTTCTTTTTTCTTTTTCATATTTTTTCGCCCCAATCCCCCCCCT
CTTTTCTCCCTCCTCATCCTCTTCCCTTATTTCTCCCCACCTCAATTCCT
TTATCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_g06.b1 MSMg01no444_g06.b1 CHROMAT_FILE:
MSMg01no444_g06.b1 PHD_FILE: MSMg01no444_g06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:17 2005
         (171 letters)



>mm_chr12_118959117_118959692
          Length = 576

 Score =  306 bits (158), Expect = 6e-88
 Identities = 170/176 (96%), Gaps = 5/176 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgattgggccactgagactgtcctgaagcagagtgtaaaataaaaatgtatatgctaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ttgattgggccactgagactgtcctgaagcagagtgtaaaataaaaatttatatgctaga 260

                                                                       
Query: 61  cattttaatatagtgctttaggagttctta---actct--gaggaggagttcaaaagtac 115
           ||||||||||||||||||||||||||||||   |||||  ||||||||||||||||||||
Sbjct: 261 cattttaatatagtgctttaggagttcttagcaactctcagaggaggagttcaaaagtac 320

                                                                   
Query: 116 agtctgtggagcgtggtctccagtgtcttctagcagagagtctatcacaagaacga 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctgtggagcgtggtctccagtgtcttctagcagagagtctatcacaagaacga 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 576
Length adjustment: 8
Effective length of query: 163
Effective length of database: 568
Effective search space:    92584
Effective search space used:    92584
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)