XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGCGGATCCGCGGAAT
TCTCTTTCCCCTTGACGAAATGTAATTAAGACTGGAGAGCATAGCTCTTT
CATTTGGATCTGTAATGTCTGTAGGTGTTGTTCTCAGCACTGGATTTACA
AGCTCTGCACCCAAAAAAAGGTGGCTTAATGCTTCTGAGCAGTAGTTTCA
ATGTCTGTAAGAAAGAAAGATACAGAGTAGGTTGAACATAATGAATAAAA
TATGCAGCATCCTGACTCAAACACAGGAAACATTGAACAATAGCAGTTTA
CCTTTATAATCAGAGAAATGATGTATAAGGGTTATTGGTTCATCATTTAA
TTAATTCTCTAAGTGAATTATTCCCACACAACCTAGAGTTAGGCAGAGCC
CAGGGTGTCAAGAATGAACTCACCACTTGCTACCATATAACAAGAGAAAT
AAAGACTGACTTGCTAGAGCTTAGCCGCTAGCTTGGTATATAGCTTGATA
GTAGTGGAAAAGCTAAGAAGTGGGGTCTAGAAGAAGGTTTTCAGGTCACT
GTGGGTGTGTAGAGGCTTAAAATTTTGCAAAACCTACTTTAATAAGGGTT
CTCAAAAGTTTTAAATCTTCCTCTAGACCAGCGGTCTTAAGGTAGGGGCC
TAAAGAATGGTAATTAGTACCAGGGGAAGTTGGAACCCGTTTTATAAAAA
AGGACATTGGGGGTCAAATCTATATCCTGGGGGTCCGACCTTCCACGTTC
ACTTTTTTCCGGTTACCCCCACACAA

CACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGACAGCGAAAGTCACAGGGACACAAATCAAGGAGCAC
TGGGACCAGAATGCCTGCAGAGAGCAGCCCTAAGCAGCCTGGAATGGGTC
ATGGCCACTGCATGGCTGAGGTCAAATGAAGTAGGTGGTGAGTGTGCAAT
GCTTAGGAAGTGACCAATCCACCCAGGAGTCTAAAGTAAAAAAAAAAAAA
TAAAAAAGGCTCACGCGTTGGGGCTGAGCACTGCTGAAGGAGTAGGAAAA
GACTAGGCACGAAGATTTTATGTTCCTCTTTTCAATGCAGTGTCCTCAAG
CTGTAGGCTGTTTTGAATATCTGCATTCCACTTGCTGTGTGATCAGTGGG
AGTTTGCTTGTGGAGGTTAGACCAGGCAGGCAGTGCTGTGCCTCCTTCAA
TTGTGATCTGTTCATGTGGAAACTTGAGCTGCATCTAGACCTCACTTAGA
GTTTTAGCTTCTGTGATATCGTAAGCTTCAGAATTTTAAATTATACTGTA
TGTTCATCATCTAATCCAATCTTAGTTGTAAGCCGTCAAGACGTCTGTGG
AACATTTGAGAGGTACGGGTGTGTGTGTGCCTGTCGCCAATTCTTCTTTT
TTTTCTTCTACCCCCCCTCCCTTTTCTCCCTTCCTTCCCTCTCCTTTTTC
CCCCCTCCCCATACCCTATCCCCCTTTTTCATTCTCTATCTTA

Query= MSMg01no444_m12.b1 MSMg01no444_m12.b1 CHROMAT_FILE:
MSMg01no444_m12.b1 PHD_FILE: MSMg01no444_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:47 2005
         (489 letters)



>mm_chr12_13667675_13668563
          Length = 889

 Score =  917 bits (474), Expect = 0.0
 Identities = 483/486 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctctttccccttgacgaaatgtaattaagactggagagcatagctctttcatttg 63
           |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaatactctttccccttgatgaaatgtaattaagactggagagcatagctctttcatttg 630

                                                                       
Query: 64  gatctgtaatgtctgtaggtgttgttctcagcactggatttacaagctctgcacccaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gatctgtaatgtctgtaggtgttgttctcagcactggatttacaagctctgcacccaaaa 570

                                                                       
Query: 124 aaaggtggcttaatgcttctgagcagtagtttcaatgtctgtaagaaagaaagatacaga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aaaggtggcttaatgcttctgagcagtagtttcaatgtctgtaagaaagaaagatacaga 510

                                                                       
Query: 184 gtaggttgaacataatgaataaaatatgcagcatcctgactcaaacacaggaaacattga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtaggttgaacataatgaataaaatatgcagcatcctgactcaaacacaggaaacattga 450

                                                                       
Query: 244 acaatagcagtttacctttataatcagagaaatgatgtataagggttattggttcatcat 303
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 449 acaatagcagtttacctttataatcagagaaatgatgtaaaagggttattggttcatcat 390

                                                                       
Query: 304 ttaattaattctctaagtgaattattcccacacaacctagagttaggcagagcccagggt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttaattaattctctaagtgaattattcccacacaacctagagttaggcagagcccagggt 330

                                                                       
Query: 364 gtcaagaatgaactcaccacttgctaccatataacaagagaaataaagactgacttgcta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtcaagaatgaactcaccacttgctaccatataacaagagaaataaagactgacttgcta 270

                                                                       
Query: 424 gagcttagccgctagcttggtatatagcttgatagtagtggaaaagctaagaagtggggt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagcttagccgctagcttggtatatagcttgatagtagtggaaaagctaagaagtggggt 210

                 
Query: 484 ctagaa 489
           ||||||
Sbjct: 209 ctagaa 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no444_m12.g1 MSMg01no444_m12.g1 CHROMAT_FILE:
MSMg01no444_m12.g1 PHD_FILE: MSMg01no444_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:47 2005
         (280 letters)



>mm_chr12_13492174_13492853
          Length = 680

 Score =  534 bits (276), Expect = e-156
 Identities = 279/280 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcttttcaatgcagtgtcctcaagctgtaggctgttttgaatatctgcattccacttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcttttcaatgcagtgtcctcaagctgtaggctgttttgaatatctgcattccacttgc 260

                                                                       
Query: 61  tgtgtgatcagtgggagtttgcttgtggaggttagaccaggcaggcagtgctgtgcctcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 tgtgtgatcagtgggagtttgcttgtggaggttagaccaggcaggcagtgctgtacctcc 320

                                                                       
Query: 121 ttcaattgtgatctgttcatgtggaaacttgagctgcatctagacctcacttagagtttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaattgtgatctgttcatgtggaaacttgagctgcatctagacctcacttagagtttt 380

                                                                       
Query: 181 agcttctgtgatatcgtaagcttcagaattttaaattatactgtatgttcatcatctaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcttctgtgatatcgtaagcttcagaattttaaattatactgtatgttcatcatctaat 440

                                                   
Query: 241 ccaatcttagttgtaagccgtcaagacgtctgtggaacat 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccaatcttagttgtaagccgtcaagacgtctgtggaacat 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)