BAC Information

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BAC

Clone NameMSMg01-445B02
Chromosome12 (Build37)
Map Location 7,085,534 - 7,086,051
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445B02.T7 (MSMg01no445_b02.b1)MSMg01-445B02.TJ (MSMg01no445_b02.g1)
ACCAG534086AG534087
length727802
length of high quality
(start - end)
522 (41 - 562)294 (68 - 361)
definitionCHROMAT_FILE: MSMg01no445_b02.b1 PHD_FILE: MSMg01no445_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:09 2005CHROMAT_FILE: MSMg01no445_b02.g1 PHD_FILE: MSMg01no445_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTAAACCTCTATGTGATGAGTGGCCATTGTACTGCACAGGGCAGACAAAT
CACGAAAAGCCTGCATTTACTAGGATTCTCATTGTCCCTTTGAAGAATCT
TCACTGTATCTCTAGATCCTATTAGCTAGTCCTTCTCAGTTGTGAACATT
CTCCCCACATGACCTCTACTGAATGTCTAAAGTTCTGAGACTCATTAGCA
TCCCCATTTTCCTCTGTTCTTCCCAAATGATGGTCCAAAAGGAGCTAACA
TCTAAACTATCCTGAGGTACATACACAGTTTTATTTTGTTGTTGTTAAAG
AAAAGTCTAGACCGTTTATAACTTCAGAACCCCAGTACAGCTTCATCTGA
AGGCGATTTTCTTCCCACCCACCATCATTCATGGTCTCAAGCCTGTTCTA
TTCTTTCTTGTTTTTCTTGAATATTTTCTTTATTTACATTTCAAATGTTT
TCCCCTTTCCAGGACACCCTTCAGAAAACCCCATCCCATCCACTCTCCCC
CTGTCTCTATGAGGGTGCTCTAATATACACCCACCAACTTCCGTTTTCTG
ACCCTGGGATTCTCCTACACTGGGGCGTTGAACACCCACAGACCCAAGGA
CCACTCCTCCCACTGATATCCAAAAAGCGATCCTCCGCCACATATGTGGC
TGGAGCCCGGGGTCTCCTCCGGTGAAC
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTGATCTTTCCAACACTTTTATCATGAATGGGT
GTTGGATCTTGTCAAATGCTTTTTCTGCATCTAATGAGATGATCATGTGG
TTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGACTTTCG
TATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGAT
GGATGATTGCTTTAATGTGTGCTTGGATTCGGTTAGCAAGAATTTTATTG
AGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTAT
ATTTGTTGGGTCTTTCTGCGGGTTACTTATCAGACTAATTGTGTGTGTGT
TTCTAACATCCAGCTTTTTCTGTTTTTTTTCTATCTATCTTCCACTACCC
TTCTCCTTTTCCTTTTTCTTCTTTCTCCTTTTCACCCTTTCTCCTACTCC
CGTTTTTTCTGTTTCTTCTTCTTCTTTCTATACTCCTTTTTCGCTTTTTT
CCCCTTTACTTTATTTTCCCTTATTTCTTTTCTTTATTCCTCTCGTATTC
TTCTGTTTTTATTTTCTCCTTTTTATCTTTTTTTTATTTTTTTTTCTCTA
CCTTTCCCCAGATTTCATTTTTTTTTGTCCTCTTTTCTTTTCTAATTCTT
TATTTTTTATTATTCTCGCCCTATACCACTATTTTAATCTATATTACCAT
TATTATCTCACACATTCTTCTTATNCCTCCTTTTTGCATCTCCCTCTCTC
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_b02.b1 MSMg01no445_b02.b1 CHROMAT_FILE:
MSMg01no445_b02.b1 PHD_FILE: MSMg01no445_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:09 2005
         (522 letters)



>mm_chr12_7085439_7086360
          Length = 922

 Score =  986 bits (510), Expect = 0.0
 Identities = 516/518 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaacctctatgtgatgagtggccattgtactgcacagggcagacaaatcacg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gaattcctaaacctctatgtgatgagtggccattgtactgcacagggcagacaaatcacg 554

                                                                       
Query: 65  aaaagcctgcatttactaggattctcattgtccctttgaagaatcttcactgtatctcta 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 553 aaaagcctgcatttactaggattctcattgtccctttgaagaatcttcaccgtatctcta 494

                                                                       
Query: 125 gatcctattagctagtccttctcagttgtgaacattctccccacatgacctctactgaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gatcctattagctagtccttctcagttgtgaacattctccccacatgacctctactgaat 434

                                                                       
Query: 185 gtctaaagttctgagactcattagcatccccattttcctctgttcttcccaaatgatggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtctaaagttctgagactcattagcatccccattttcctctgttcttcccaaatgatggt 374

                                                                       
Query: 245 ccaaaaggagctaacatctaaactatcctgaggtacatacacagttttattttgttgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ccaaaaggagctaacatctaaactatcctgaggtacatacacagttttattttgttgttg 314

                                                                       
Query: 305 ttaaagaaaagtctagaccgtttataacttcagaaccccagtacagcttcatctgaaggc 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttaaagaaaagtctagaccatttataacttcagaaccccagtacagcttcatctgaaggc 254

                                                                       
Query: 365 gattttcttcccacccaccatcattcatggtctcaagcctgttctattctttcttgtttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gattttcttcccacccaccatcattcatggtctcaagcctgttctattctttcttgtttt 194

                                                                       
Query: 425 tcttgaatattttctttatttacatttcaaatgttttcccctttccaggacacccttcag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tcttgaatattttctttatttacatttcaaatgttttcccctttccaggacacccttcag 134

                                                 
Query: 485 aaaaccccatcccatccactctccccctgtctctatga 522
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 133 aaaaccccatcccatccactctccccctgtctctatga 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)