BAC Information

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BAC

Clone NameMSMg01-445D02
Chromosome12 (Build37)
Map Location 33,299,806 - 33,300,303
singlet/doubletsinglet
Overlap genenone
Upstream geneBcap29, Dus4l, LOC100043081, Gpr22, Hbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
Downstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445D02.T7 (MSMg01no445_d02.b1)MSMg01-445D02.TJ (MSMg01no445_d02.g1)
ACCAG534181AG534182
length734736
length of high quality
(start - end)
591 (39 - 629)517 (66 - 582)
definitionCHROMAT_FILE: MSMg01no445_d02.b1 PHD_FILE: MSMg01no445_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:19 2005CHROMAT_FILE: MSMg01no445_d02.g1 PHD_FILE: MSMg01no445_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTA
TTCTTGCTGGAGAGTTTGATTGACATGATGACAATATGTACTTTGCAATC
AGACAATCAGAGACATACTTTATGAGGAAAGCTATCAAAGAAAAGCCTTT
GTTGTGAGTTATTATTAAGTCCCAGTATATTAGTGCATTACCCTCTCAGA
AAGATCTTAAAGTTTACTTAAAACTTCTTTGGACAGTGCCAAAGCCTTTC
GAAATATAAGGTAAACATGTGCCCTTGTTCTTGAGGAATACAGACTGCAT
TTGGAAAGACTCCGTTTTGAAAGAAAATAACAATGATTTCAGAGGAGGAG
AATGCAACATTGAGAGCAAACATGATTTATGATTCATGAGCTAATTAGGG
GCAGAGCTGGAACTAGATCTTCACTCTTTATATTCTGAGTTCAATGTGCT
TTTTATTGCCCAAATTGTCTTCCTGGCATGCAAAGACTTAGTTTATCCTA
AGACAAGTATTTTATCAATCTCTACCTTGTTAAGAAATATAATTAAGACA
TACAAAAGTACCAAGAATAAAATAATGATACTATAGTGCCCACCACATAG
TTTAAAAAGTAAACTATTGTAATACCTAATACCTAGCTTAAGAAGTAAGA
TATATCACACTGAAGAGACAGCTCAGTGGTAGGTTAAATTCCTCAAACTG
CTTTTGCATAAAACCCCAGTTTGGGGGCCCATGG
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGT
GGTTCCTCATAAAACTGGACATAGTACTACCGGAGGATCCAGCATTACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCTAGATGCCCCTCAACAGAGGAATGGATACAGTAAATGTGGTACATC
TACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATT
CCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACAC
ATTCACTAAGGGACTCTCACCATATGGACTCACTGATAAGTAGATATTAC
CCCCCAACCTAGGATACCCAACATATAATATATAATTTGGTTATTACTTG
GCCACTCCAGAAAAATGCAACACTGAACGCGGCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_d02.b1 MSMg01no445_d02.b1 CHROMAT_FILE:
MSMg01no445_d02.b1 PHD_FILE: MSMg01no445_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:19 2005
         (591 letters)



>mm_chr12_33299806_33300796
          Length = 991

 Score =  924 bits (478), Expect = 0.0
 Identities = 493/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctattcttgctggagagtttgattgacatgatgacaatatgtactttgcaatca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ggaattctattcttgctggagagtttgattgacatgatgacaatatgtactttgcaatca 439

                                                                       
Query: 64  gacaatcagagacatactttatgaggaaagctatcaaagaaaagcctttgttgtgagtta 123
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 438 gacaatcagagacatactttattaggaaagctatcaaagaaaagcctttgttgtgagtta 379

                                                                       
Query: 124 ttattaagtcccagtatattagtgcattaccctctcagaaagatcttaaagtttacttaa 183
           ||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||
Sbjct: 378 ttattaagtcccagtatattagtgcatcaccctctcagaacggtcttaaagtttacttaa 319

                                                                       
Query: 184 aacttctttggacagtgccaaagcctttcgaaatataaggtaaacatgtgcccttgttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 aacttctttggacagtgccaaagcctttcgaaatataaggtaaacatgtgcccttgttct 259

                                                                       
Query: 244 tgaggaatacagactgcatttggaaagactccgttttgaaagaaaataacaatgatttca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tgaggaatacagactgcatttggaaagactccgttttgaaagaaaataacaatgatttca 199

                                                                       
Query: 304 gaggaggagaatgcaacattgagagcaaacatgatttatgattcatgagctaattagggg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaggaggagaatgcaacattgagagcaaacatgatttatgattcatgagctaattagggg 139

                                                                       
Query: 364 cagagctggaactagatcttcactctttatattctgagttcaatgtgctttttattgccc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 cagagctggaactagatcttcactctttatattctgagttcaatgtgctttttattgccc 79

                                                                       
Query: 424 aaattgtcttcctggcatgcaaagacttagtttatcctaagacaagtattttatcaatct 483
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 78  aaattgtcttcctggcatgcaaagacttagttcatcctaagacaagtattttatcaatct 19

                             
Query: 484 ctaccttgttaagaaata 501
           ||||||||||||||||||
Sbjct: 18  ctaccttgttaagaaata 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 991
Length adjustment: 10
Effective length of query: 581
Effective length of database: 981
Effective search space:   569961
Effective search space used:   569961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)