BAC Information

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BAC

Clone NameMSMg01-445J17
Chromosome12 (Build37)
Map Location 59,031,747 - 59,031,986
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445J17.T7 (MSMg01no445_j17.b1)MSMg01-445J17.TJ (MSMg01no445_j17.g1)
ACCAG534498AG534499
length753747
length of high quality
(start - end)
241 (67 - 307)481 (66 - 546)
definitionCHROMAT_FILE: MSMg01no445_j17.b1 PHD_FILE: MSMg01no445_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:52 2005CHROMAT_FILE: MSMg01no445_j17.g1 PHD_FILE: MSMg01no445_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGCGCGCGGAATTCCAATC
AAATTTCGAATAAGCAAGCACTATGATTATTCTCCAGATACCCATGACCC
AGGCTCAATAATTGTCAACATTCTGTCATCCTCATTTTGTCTCTTCTCAC
ATCCCTGTTCCCTGCCCCTGGTACCACTGCTACATTTCCACAGTCCCTTT
AGAGATCTGATTGTTGTGCACTGAAATGCACCAACACTGAATGCACTGAC
TCATGATTGTGTCTCTGCTTGAGAGGTTAAATGGTTGTTATCCAAGAGCA
ATGGTATTTCTGTTTATCCAATAGGAGAGGAAACTAGACAGCAGGGGAAT
GGTAAGGAGTGCTACGCGAGGATGGTAAGCAAACTGGCTGGTAAGCTGGT
AAGCAAACTGGCTGTATTCTGATGTATTCTCTTCTAATTTCATCCTTGTT
GAAAACTTTATGCCAACTATAAGCTACATAGTAAGGATGAAGCTCATTCA
TGTCATAACGATGGTATCTTCCTAAACTAGGCATTCTTCTTCTTTAGGGC
TTTTTTGGTGTATTATGTACATGTGAACAATCTTTTCCGCTTGTATAACC
TATCTGTCTCAAATTTTTGCCTTTCTTCGTAAATTTTGTTTTTTTTTCCC
CTTTCCGATTACTTATTATTGCATCCCCCCGCCTTTTACCCAAACTAACC
CATTTAATTTGTAAATTCATTAGTTCTTTTACTCCAAATATTATTTATTT
CTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTTGTTTAGTTCTGCACTCCATTTTTTGATAGTGT
TATTTGAATTTCTGAAGTCCAGCTTCTTAAGCTCTTTGTATATATTGGAT
ATTAGTCCCCTATCAGGTTTAGGATTGGTAATCAGCCAAGAAACGCAGAC
ACTATTGCATACACCAGCAAGATTTTGCTGAAAAAACCCTGATATAGCTG
TCAAGAGAGGCTATGCCTAGCAAACACAGAAGGGGATGCTCACAGTCATC
TATAGGATGTATTTCAGGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCA
AGAGCTAAAGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAA
CCAGTACCCACAGAGCTTATATCTCTAGCTGCATATGTAGCAGAAGATGG
CCTAGTCAGCCATCATTGGGAAGAGAGGCCCTTGGTCTAGCAAACTTTAT
ATGCCCCAGTACAGGGGAACACCAGGGCCAAGAAGTGGGAGTGAGTGTGT
AGGCGAGCGGTCTGGTTCCCTTCTCTCCTCTTTCCCTCTTCCCTTTTCTC
CTTTCTTCTAACCTTCATGGTACTCCCCTTTTTTTTTTTTTTTTTTGTTT
GATGTTTTTTCCCTTTTTCTTTTTTTTTATCTTCTTTTTTTTTTTTATTT
TTTCCCTTTTCCTGTATCTTTCCCTTTCCTTTTTCCTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_j17.b1 MSMg01no445_j17.b1 CHROMAT_FILE:
MSMg01no445_j17.b1 PHD_FILE: MSMg01no445_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:52 2005
         (241 letters)



>mm_chr12_59031547_59032187
          Length = 641

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcactatgattattctccagatacccatgacccaggctcaataattgtcaacattctgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcactatgattattctccagatacccatgacccaggctcaataattgtcaacattctgt 260

                                                                       
Query: 61  catcctcattttgtctcttctcacatccctgttccctgcccctggtaccactgctacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcctcattttgtctcttctcacatccctgttccctgcccctggtaccactgctacatt 320

                                                                       
Query: 121 tccacagtccctttagagatctgattgttgtgcactgaaatgcaccaacactgaatgcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 tccacagtccctttagagatctgattgttgtgcactgaaatgcaccaacactgaatgcat 380

                                                                       
Query: 181 tgactcatgattgtgtctctgcttgagaggttaaatggttgttatccaagagcaatggta 240
           |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactcgtgattgtgcctctgcttgagaggttaaatggttgttatccaagagcaatggta 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)