BAC Information

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BAC

Clone NameMSMg01-445L16
Chromosome12 (Build37)
Map Location 57,481,094 - 57,481,337
singlet/doubletsinglet
Overlap genenone
Upstream gene1110008L16Rik, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837
Downstream geneE030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L16.T7 (MSMg01no445_l16.b1)MSMg01-445L16.TJ (MSMg01no445_l16.g1)
ACCAG534591AG534592
length750732
length of high quality
(start - end)
242 (63 - 304)112 (62 - 173)
definitionCHROMAT_FILE: MSMg01no445_l16.b1 PHD_FILE: MSMg01no445_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:02 2005CHROMAT_FILE: MSMg01no445_l16.g1 PHD_FILE: MSMg01no445_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGC
GCCTTCCTGGGAATTTAGGGTTCCTGTATCAGCCAGCTTTTTTTTTTTTT
TTTTTTAAATAAAACAGAATACCTAACAGGTGATACATGAAGAAGACACT
TGTTTGGTTTGAAGTTTTTTGAGACTCGACTCTGTGAACCTAGCATACTT
GAAATTCTGATGAGAGCCATGTCTTTCAGCTCTATTACATCATGGATAAG
GATGCGTGCTCAGAGAGTACATAACAAAACAGGACATCAAGGAGAGATGA
GCCCCTTTTTTTTTTGTGAGGTAGCATATCTGATATCCTAAAGACTTCTT
ATGAAGCCTCACCTCTTAAGGGCTTCAAAACATTCTCCTAATATTATCCT
GGGGACCAAGTTCCTGGTGACAATGAGCCCGCCCTCCAAGGGACACTTTA
GCTATGGTTTTCCAAAAGTACAAGATTCGCCATATGTTAATGTGTTTCTG
GGCTCCTATTCTACTGATTATTATTTTCCTTGAAGACTACATATTCTCTT
TTTCCTCACCTTACCTGATTTCCTCCCATATTTCAACTGAAAGTAGCCTC
TTTTCCTTTTCTTTTTTTTTTCCCATACTTTCCCCTCTTTCTTAATTATC
TTTCCGGCCGCCTCTATTTTCCGGCATCCGTATACCGACCCTATCTGTTT
GACTCCCGTAAGTGTTTCACTTTTTGGCCCCTTATTCCATTTTCTTTCTG

GGTTGGCCTGGCGNCCGCCTGTTTCTCAAATTTAGGTGAACTATANAAGT
ATCAGCGAAATTCTGGAGCTGGGAAGTTTCCCACACCTCATCTCATTCTC
TACTCACAACACCTTCTCAAAACAAGATGCTATTATCCTCCACTTTTCAG
GTACAGAAACTGAAGCTAGTTGNCATTAGGTAACCCAAGAGGAATGCTTT
CAAAGGCCTTTAATTCTTACANAACTATTNNNNTACACATGCTGCGTGCA
GCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCANTTTTTTCTTTTTNNCCCCCCNNCCTTTTTTTTTTTAAAAACCNNC
CTTAACAAAACAAAAACACCNTTTTTTTTAAAATATTTNGGGTTTGGGCT
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
AANNNNACANNAAAAAAAAGNNNNNNNNNNNNNNNNNNNNNNNGGGGGGG
GGGTGCTGGGGGNNNNNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGTGCGGCTGGGGGGGGG
GGGGGGGGGTGGGGGGGGGGGGGGGGGGTCTNNNNNNNNNNNNNNNNTAN
NNNNNNNNNNNNNNNNNNNAAATAACCACAAACAAAAAATATTNTTTTNN
NNNNNNNNNNNNNNNTNTTTTTTTCTTTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l16.b1 MSMg01no445_l16.b1 CHROMAT_FILE:
MSMg01no445_l16.b1 PHD_FILE: MSMg01no445_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:02 2005
         (242 letters)



>mm_chr12_57480893_57481537
          Length = 645

 Score =  420 bits (217), Expect = e-122
 Identities = 237/245 (96%), Gaps = 4/245 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttagggttcctgtatcagccagctttttttttttttttttttaaataaaacagaatac 60
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 202 atttagggttcctgtatcagtcagcttttttttttttttttttt-aataaaacagaatac 260

                                                                       
Query: 61  ctaacaggtgatacatgaagaagacacttgtttggtttgaagttttttgagactcgactc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaacaggtgatacatgaagaagagacttgtttggtttgaagttttttgagactcgactc 320

                                                                       
Query: 121 tgtgaacctagcatacttgaaattctgatgagagccatgtctttcagctctattacatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgaacctagcatacttgaaattctgatgagagccatgtctttcagctctattacatca 380

                                                                       
Query: 181 tgga---taaggatgcgtgctcagagagtacataacaaaacaggacatcaaggagagatg 237
           ||||   |||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 tggaaggtaaggatgtgtgctcagagagtacataacaaaacaggacatcaaggagagacg 440

                
Query: 238 agccc 242
           |||||
Sbjct: 441 agccc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 645
Length adjustment: 9
Effective length of query: 233
Effective length of database: 636
Effective search space:   148188
Effective search space used:   148188
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)