BAC Information

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BAC

Clone NameMSMg01-445O19
Chromosome12 (Build37)
Map Location 34,524,699 - 34,525,097
singlet/doubletsinglet
Overlap genenone
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445O19.T7 (MSMg01no445_o19.b1)MSMg01-445O19.TJ (MSMg01no445_o19.g1)
ACCAG534740AG534741
length771772
length of high quality
(start - end)
267 (44 - 310)399 (68 - 466)
definitionCHROMAT_FILE: MSMg01no445_o19.b1 PHD_FILE: MSMg01no445_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:18 2005CHROMAT_FILE: MSMg01no445_o19.g1 PHD_FILE: MSMg01no445_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
ATCTTCTCACAACTTTTATCATGAAGGGGTATTGGATTTTCTCAAATGCT
TTCCCAGCATGTAACAAGATGATCATGTGATTTTTGACTTTGCGTTTGTT
TATATAGTAGATTACATTGATGGATTTCCGTATATTAAATCACCCCTTCA
TCCCTGGGATATAGCCTACTTGATCATGATGGATGATCATTTTGATGTGT
TCTTGGATTCGGTTTGTGAGGATTTTATTGAGTATTTTTGCATCTACTTT
CATAAGGGATTTTTGTGAGAAGTTCTCTTTCTTTGTTGGATCTTTGTGTG
GTTTATGTATCACAGTAATTGTGGCTTCATAGAATGAATTGGGTAGAGTG
CCTTTTGTTTCTATTTTGTGTAATATTTTGAGTAGAGTCGGAATTATGTC
CTCCTTGAAAGTATGTATATTATTTTGCTTTATGTCCATCTTATTCCTGG
GCTTTATATCTCTTTTGCTCTTATTATTACCCCCTGCTTTTCCTTTTCTT
TTTTGCCCCCTTTCCCCCCTTATTTTTTTTTTTTTTTTTAATCTTTTCCC
CCTTTCTACCTTCGCTTTCCTTTTTTTTTTATTTTCCACCTCCTTATTTT
ATCTCCCTTTCTTTTTCCCATTTATTTCCCTCTTTTCTTTTTTTTTTCTT
ATTTTACTCTTTCCTCTTCTTCTTTTTCCCCTTTTACCTTTTTTTCTTTT
TCTCTACCTTTTATTTCTTTT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCATATTAGTAAGGACTAGTAGTTCATGCTCAAC
ATTGCAGGAGAGAGAATTGCCTACCAGCTGTGGACCCCAATCATGACTTG
TATTTTGATTTCCCTCTGCTTGAGTATGTTTCTCTATCACTTGTTTTCAA
ATTCAGGAGAATTATAACGATGCTTATCATATTCTTCTGATCCAAGATCC
AAAACCAATTGTATAATTTAAGCAAATATATATGTAATTAGAGTGGATGG
CCACTCTCAGGGGTATATTCCTCAACATATATCTTCAAAGTAGACTCTAT
ATTAATTTTTAAAATGCTCTAGAGCTTGCAAAGTATTCTGGAATAGAAGA
CATAGCCAATTAAAAGACTAAAAGTTGCAGTATCCTTAATGCATTTCTTT
AAGTTTTAATATAAATTAATTGGGAGTAATTCCTAGGAGAAAGTTTTAAT
GCTATAATCCCGGGATGTTTTTATGAAGGAGCTTCTGTAAGAAAAAAATC
CCAGTCTCCGGCCTGTTGTAAAAAGACGGTTTTTCTTTCTCTAAAAAATG
TTGTTTTGTAGGAAAAAAATGGAGAAAGTCTATGGGTCCAATACCACCTT
TTTTTAAGTGATTTGTTTGCCCTTACCTCCGTCTGTTTTTTATTTTTTAT
CTTTATCTTTATTCTCCCTTTCTTTTTTTGCATCCCCCCTATCCCCACCA
ATATCTATTCTTAGTAACCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_o19.g1 MSMg01no445_o19.g1 CHROMAT_FILE:
MSMg01no445_o19.g1 PHD_FILE: MSMg01no445_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:18 2005
         (399 letters)



>mm_chr12_34524499_34525297
          Length = 799

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catattagtaaggactagtagttcatgctcaacattgcaggagagagaattgcctaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catattagtaaggactagtagttcatgctcaacattgcaggagagagaattgcctaccag 260

                                                                       
Query: 61  ctgtggaccccaatcatgacttgtattttgatttccctctgcttgagtatgtttctctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgtggaccccaatcatgacttgtattttgatttccctctgcttgagtatgtttctctat 320

                                                                       
Query: 121 cacttgttttcaaattcaggagaattataacgatgcttatcatattcttctgatccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttgttttcaaattcaggagaattataacgatgcttatcatattcttctgatccaaga 380

                                                                       
Query: 181 tccaaaaccaattgtataatttaagcaaatatatatgtaattagagtggatggccactct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaaaaccaattgtataatttaagcaaatatatatgtaattagagtggatggccactct 440

                                                                       
Query: 241 caggggtatattcctcaacatatatcttcaaagtagactctatattaatttttaaaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggggtatattcctcaacatatatcttcaaagtagactctatattaatttttaaaatgc 500

                                                                       
Query: 301 tctagagcttgcaaagtattctggaatagaagacatagccaattaaaagactaaaagttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctagagcttgcaaagtattctggaatagaagacatagccaattaaaagactaaaagttg 560

                                                  
Query: 361 cagtatccttaatgcatttctttaagttttaatataaat 399
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtatccttaatgcatttctttaagttttaatataaat 599


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)