BAC Information

Click to search

BAC

Clone NameMSMg01-446F06
Chromosome12 (Build37)
Map Location 68,737,982 - 68,738,251
singlet/doubletsinglet
Overlap genenone
Upstream geneMdga2, LOC100040745
Downstream geneLOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446F06.T7 (MSMg01no446_f06.b1)MSMg01-446F06.TJ (MSMg01no446_f06.g1)
ACCAG535050AG535051
length760735
length of high quality
(start - end)
276 (37 - 312)245 (83 - 327)
definitionCHROMAT_FILE: MSMg01no446_f06.b1 PHD_FILE: MSMg01no446_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:49 2005CHROMAT_FILE: MSMg01no446_f06.g1 PHD_FILE: MSMg01no446_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAC
AGGTTACTCCTCATTTTCAAGGATCCACACACCGCCATTTTTCTCTGTGT
GTCATCTCCTCACGCATTGTACAGAGTAAAATCAGTATGGATCCAGATGT
GCCGACTTCTATGGTGCCTGTGGAAGCAAGATAGGCTGCTAGAAGTTTAA
GACTGGGGGAAGGAGTTAAGCCATAGAAGAGTCTCTTGTATGATACTCCA
GAGCAGAGTTCTGCAGGATGCACTGGCAGATAAAATAAAAATGTTAAGAA
GAGAGTTGCGACTGTTTGTTACTTCAGAAATTGATGTTGCCATTATCAAT
AAGCAAGATCATAAAATATAGGGGAGCTGGAGTGAGGTAAGTGCAGTTGT
TTCATGTGGAGTGACAGCTATCCACCTGTCCAGCATTTGACTACAAGCTA
CATTTTAACATCTGTGATAGATAAACCGAAATATGAGAACCTCCTTTCTT
TTGAACATCTCCTAAACACAAGGTTCAAATTGTGATCTCTAAGGAAGAAA
GACATATGTTTTTGGGGGGAAAGATCCAACTATATGTGTGCCAATCCCTA
TATGCCCAAGGATAGCTTTAGTGGATGAAGACCTCCGGCTATGTAACATG
TCCCCTGTACCTCCCTGTAACTATGGGTACACATATTTAAAAAAACATCT
TCCCATTATAATTGGACTATCATTACCGATTCTCCCACAACATACTTGAA
TTCTTGCTCN
CTCGATTCATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGACAGGAACAATT
ATGGGTCAGAGATGTGACTGTGGTATGGCAATCCCATCCCTCACTTGATG
TCTTCCTGCTGGAGATGGGCTCTATAATTTCCCTCTTCTTACTGTTGGGC
ATTTCATCTAAGGTCCCCCCCCTTTGATTCCTGAGAGCCTCTTACCTCCC
AGGTCTCTGGTGCATTCTGTAGGGTCCCCCCAACCTCAACATCTAAGAGA
TTATTTTCTTTAGACATTGTACTTTTCTTTCTTTTTGNAGATTATATCAC
TCAAAATGATCTCTAATTCTATCACTAGATAAATGATGTGGTTCCACTTT
TTTCATAACTCAGCATTATTTTTTCTTTTTCATGTCCCACATGTTTTTTT
ATTAATCATTATTTCATGAACAGATTTAGCTTTTTTCTGTGTTTGGAGTG
TACTACTAAATTGCGAGGCACTGCACAAGGGCATGTATATGTCTTTTTTG
CCCCTCATTACTTCTGCACCACTGCATTAACACTCTGATTTCCCCATACC
CCCTCCGTTTCCCCTCCCGCCCCCCTTTTTTGTCTTTCTTTCAGACTTAT
CCCTTGCTTTTTAACCTCCCCCTCTTGCATCTCTTATTTCCCCCTTCTTT
TCTTTCCCCTTGTCTTATCTCTATTTACTTTTTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_f06.b1 MSMg01no446_f06.b1 CHROMAT_FILE:
MSMg01no446_f06.b1 PHD_FILE: MSMg01no446_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:49 2005
         (276 letters)



>mm_chr12_68737779_68738454
          Length = 676

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcacacaggttactcctcattttcaaggatccacacaccgccatttttctctgtg 63
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcacacaggagagtcctcattttcaaggatccacacaccgccatttttctctgtg 263

                                                                       
Query: 64  tgtcatctcctcacgcattgtacagagtaaaatcagtatggatccagatgtgccgacttc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgtcatctcctcacgcattgtacagagtaaaatcagtatggatccagatgtgccgacttc 323

                                                                       
Query: 124 tatggtgcctgtggaagcaagataggctgctagaagtttaagactgggggaaggagttaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatggtgcctgtggaagcaagataggctgctagaagtttaagactgggggaaggagttaa 383

                                                                       
Query: 184 gccatagaagagtctcttgtatgatactccagagcagagttctgcaggatgcactggcag 243
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct: 384 gccatagaagagtctcttgtataatactccagagcagagttctgcaggatgcactgacag 443

                                         
Query: 244 ataaaataaaaatgttaagaagagagttgc 273
           ||||||||||||||||||||||||||||||
Sbjct: 444 ataaaataaaaatgttaagaagagagttgc 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)