BAC Information

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BAC

Clone NameMSMg01-446K06
Chromosome12 (Build37)
Map Location 26,528,278 - 26,678,666
singlet/doubletdoublet
Overlap geneLOC668726
Upstream geneMboat2, EG629397, C330002I19Rik, Id2, LOC100042973, LOC100042974
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446K06.T7 (MSMg01no446_k06.b1)MSMg01-446K06.TJ (MSMg01no446_k06.g1)
ACCAG535287AG535288
length729763
length of high quality
(start - end)
248 (69 - 316)239 (75 - 313)
definitionCHROMAT_FILE: MSMg01no446_k06.b1 PHD_FILE: MSMg01no446_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:14 2005CHROMAT_FILE: MSMg01no446_k06.g1 PHD_FILE: MSMg01no446_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,528,278 - 26,528,522)(26,678,432 - 26,678,666)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCCGCGGAATTCAAT
AGTTGTGACGTATGATGTATAAGAGTTGAACTATTTAGTGCACAACTCTC
AAATCTCCTGATCTGGCCAAGGAGGCTTAGCACCGAGTTACTTTCCAAAA
TGCTAACGATTCATGCACTGTAGGATTTGCAATAAAACATTGTCAATGAT
AAGATCTAATAGGATCTCCCTAACTAAGCAGAATTTGTGTAAATGAGGTC
TTAATGCTGTTGACTGTGCCATCCTCCCATCTCAGCCTCCAGTTGCAGGA
ATTCCCACTGTGTTTTACTCATCCAAGGTGGGTCTCTATTTAAAATCACA
GAGAGGTTCTGTGCGTATGGCTTAGTTCATGGAGAGTTTGTCTAGCATGC
ACAAAACCCTGAATTCAATCTTAACCCCATGTAAGCATGATGAAATGGTC
CAGATGTGTAATCTCAGCAGTTAGGAGGCCAGGGCCAAGATGATCAGGAG
TTCAAAGTTATCCTTGACTACCTATTGAATTATAGACTGGCTTATGCTAG
ACTCTGCATCTTATATCCCCGACCATATATATAAATAAATAGATGGAATT
CAATTCACTATAAACCTCTTTCCTCTTTTCCCGGTGCCCGTAAATAGGTA
TTTTGATATCTTTTCATGACCCGCACCTCCCTCTTATCTTTATCCTCTTT
GTTCTTTCACCCTCTATTCCTTATCTTCT
TGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTACAGAAAACTATGAAGGNCCGCAGGAGAGAGGGTCAAACAGTAG
CCGTGTGCTTTTGATTTGCTCCTTCCTCTGACTCAGTGACATCTGTGAGG
GACTTCCCACTCTGAGGAGTGGGGAGGCTGTTATATAGTGTGGCTGTGCC
TCTCCCCTTTGTAAACACAATAATAAACCTGGACACACATGCAGTTTTGC
TTACAGGGCCGGTAAGGTCTCTAGAGGAAACATGCTGAGGAAATCTTTTA
CGAATCTGCTATTTTTTTTTTATAGACAGAAAGATTTGCTGAGCTCCAGT
CGTCTTTCTGTCTCCCATGTCCTTCTAAAGAGCATGTGTTTTGGTTGTAC
AGATAGTCTTCACCTGTGAGACTTGTTTTCTAGACTGACTGTGCATTGAA
AGTATTGTGCCAGAAGAAATGGTCAATACTATCTGAGGATCTTTACGATT
CTTGCATACCATAATTTATCTCTTTTGTCTTGACTTATACTCGTCTATTA
AACTCCCCTCACCCCTATGGACACATTCTCTCTTTACACCCCCCCCGCCG
CGAATCATGTCCGATCTTGTTATATTCCTTCCCTCCTGATGCATCTATCA
ACTCTTCGTGCCTTTCCCGATGTTTTTTCTCCTTCTCCTCCCGTTTTCTC
CCTCACCCATATCAGCCTTTCTCACCTTCCTTAACGTCATTTGTCCCATG
TATTCTTTTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_k06.b1 MSMg01no446_k06.b1 CHROMAT_FILE:
MSMg01no446_k06.b1 PHD_FILE: MSMg01no446_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:14 2005
         (248 letters)



>mm_chr12_26528078_26528725
          Length = 648

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagagttgaactatttagtgcacaactctcaaatctcctgatctggccaaggaggctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ataagagttgaactatttagtgcacaactctcaaatctcctgatctgggcaaggaggctt 260

                                                                       
Query: 61  agcaccgagttactttccaaaatgctaacgattcatgcactgtaggatttgcaataaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaccgagttactttccaaaatgctaacgattcatgcactgtaggatttgcaataaaac 320

                                                                       
Query: 121 attgtcaatgataagatctaataggatctccctaactaagcagaatttgtgtaaatgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attgtcaatgataagatctaataggatctccctaactaagcagaatttgtgtaaatgagg 380

                                                                       
Query: 181 tcttaatgctgttgactgtgccatcctcccatctcagcctccagttgcaggaattcccac 240
            |  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagaatgctgttgactgtgccatcctcccatctcagcctccagttgcaggaattcccac 440

                
Query: 241 tgtgt 245
           |||||
Sbjct: 441 tgtgt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no446_k06.g1 MSMg01no446_k06.g1 CHROMAT_FILE:
MSMg01no446_k06.g1 PHD_FILE: MSMg01no446_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:14 2005
         (239 letters)



>mm_chr12_26678232_26678870
          Length = 639

 Score =  416 bits (215), Expect = e-121
 Identities = 230/235 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccgcaggagagagggtcaaacagtagccgtgtgcttttgatttgctccttcctctgactc 60
           |||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||
Sbjct: 435 ccgcaggagagagggtcaaacagtagccgtgtgctacagatttgctccttcctctgactc 376

                                                                       
Query: 61  agtgacatctgtgagggacttcccactctgaggagtggggaggctgttatatagtgtggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 agtgacatctgtgagggacttcccactctgaggagtggggaggctgttatatagtgtggc 316

                                                                       
Query: 121 tgtgcctctcccctttgtaaacacaataataaacctggacacacatgcagttttgcttac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 315 tgtgcctctcccctttgtaaacacaataataaacctggacacacatgcagtagtgcttac 256

                                                                  
Query: 181 agggccggtaaggtctctagaggaaacatgctgaggaaatcttttacgaatctgc 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agggccggtaaggtctctagaggaaacatgctgaggaaatcttttacgaatctgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)