Query= MSMg01no447_j20.b1 MSMg01no447_j20.b1 CHROMAT_FILE:
MSMg01no447_j20.b1 PHD_FILE: MSMg01no447_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:34 2005
(542 letters)
>mm_chr12_37615760_37616698
Length = 939
Score = 955 bits (494), Expect = 0.0
Identities = 526/538 (97%), Gaps = 3/538 (0%)
Strand = Plus / Minus
Query: 5 gaattcagtcctgtttcttctttcctccaatgctagttactagggtcaaacttaaactgt 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gaattcagtcctggttcttctttcctccaatgctagttactagggtcaaacttaaactgt 680
Query: 65 tgtacttggtagttaagagcactcacatgataagccatctcactagtccacaaccttatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtacttggtagttaagagcactcacatgataagccatctcactagtccacaaccttatt 620
Query: 125 cataatagtcacaatctaatataagaaatgatcaatgaatattagtgaaagaatatataa 184
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 619 cataatagtcacaatctaatagaagaaatgatcaatgaatattagtgaaagaatatatga 560
Query: 185 ataatcaattggataactttatcttactcagaattaaaaaaaaaaacaactaaaataaga 244
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 559 ataatcaattgtataactttatcttactcagaatt---aaaaaaaacaactaaaataaga 503
Query: 245 ctgatcttaaggattgaatattgattaaaccccagaaaggaaatatttggttaggccttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctgatcttaaggattgaatattgattaaaccccagaaaggaaatatttggttaggccttt 443
Query: 305 atctagctgtccaaattgagaatatgtaatcatcctagacaaacaagaattctcaaacgc 364
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct: 442 atctagctgtccaaattgacaatatataatcatcctagacaaacaagaattctcaaacac 383
Query: 365 tttcactagacatgacaccatcgaaaactgtatacctgttgttggtttatagaccctgtg 424
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttcactagacatgacaccaacgaaaactgtatacctgttgttggtttatagaccctgtg 323
Query: 425 gctgagattattgacagaaaacaggggacatcagtaaagacatggaaaagtgacctcccc 484
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gctgagattattgacagagaacaggggacatcagtaaagacatggaaaagtgacctcccc 263
Query: 485 ttagaataactagaagttcacttctctggaataatactttttatcacataaaaaattg 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttagaataactagaagttcacttctctggaataatactttttatcacataaaaaattg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 939
Length adjustment: 10
Effective length of query: 532
Effective length of database: 929
Effective search space: 494228
Effective search space used: 494228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_j20.g1 MSMg01no447_j20.g1 CHROMAT_FILE:
MSMg01no447_j20.g1 PHD_FILE: MSMg01no447_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:34 2005
(401 letters)
>mm_chr12_37421742_37422542
Length = 801
Score = 775 bits (401), Expect = 0.0
Identities = 401/401 (100%)
Strand = Plus / Plus
Query: 1 tattcaaagacatttccgcctgtttgttttttggaccagttactgttcgcataagtctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcaaagacatttccgcctgtttgttttttggaccagttactgttcgcataagtctgg 260
Query: 61 aaaggagccaaattatgtaaacaaattaaactttgaggatcccagtgggaatatccagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggagccaaattatgtaaacaaattaaactttgaggatcccagtgggaatatccagag 320
Query: 121 gtactgccataaaccagcaacttaagacaaactgaacatgcatgttataattgccagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtactgccataaaccagcaacttaagacaaactgaacatgcatgttataattgccagaga 380
Query: 181 aagctagagagtagtggttcctagttatggttgggaatcttaatgcatattaagagattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctagagagtagtggttcctagttatggttgggaatcttaatgcatattaagagattt 440
Query: 241 gtgttaattatgcagttatatagatcatcactcaatcctaaacctgtgtgttttgctaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgttaattatgcagttatatagatcatcactcaatcctaaacctgtgtgttttgctaag 500
Query: 301 taagtttttattttgatttccttttaatttcatatcagacaaaaattatttctgaagcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagtttttattttgatttccttttaatttcatatcagacaaaaattatttctgaagcta 560
Query: 361 tagtttatacactcagtctactaaaatgtgtaatatgtaat 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtttatacactcagtctactaaaatgtgtaatatgtaat 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
