NNAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAGCG
GCGGAATTCCAGCAAACTCACTCCATAGGTTGGAAATACTAAAAATTAAA
GGTAGAAGTTTCCCATGGAGATGAAGGTTCAGGAAGAAGGGAAGGTGGAG
ACTTGGTCTAAATGCTAGCAGAGCTGATTACGGATTGGAAAACTTAAAAA
CTTACTATAGAGCAAAGCCTAATGGTGATGCTTGAGATAGGTTCTTTCAG
CAGGCTAATATACAAGGATGCAAAGAATAAGCAGGGAGGTAAAGATTAAT
TGGCCACCCCAAACTTAGGATACCTATTTTTAAGTATTTTATCTTTTCCT
TTTTCTCTAGGAATGTAAGGGTTTTGTTTATTGTCATATTAAAAAAATCA
CCAGTGTATAATCCTAATGATGCTTAATAAGGACGTTATATGCATAAAGA
CATCTTATGTATGTACATCATTTATTTGACCATATTCACACCTTTCTCCC
TTTCCTGCTACTTCCTTTATTTTTCCAAAACATCTTTCTGTACGTGTTCT
TTGCACTTAATGAATCAGGCTTCACTGGGCCCTTTTAAATTGGCTACTTT
CAATCAGTCCTTAATTTCCCATTAAAACTATCAAGGGCGATTCATAATAA
TTAGCTCTTTGGCCGCCCTCTAAAAGGTTTCTTCTTCTTTTTTTTTTTTC
CCCTGTTCACCTACCGTGGCCTCTCCCTTTTACACTTATCATTGTTTGGA
AGGGATTCTCG

AGGGCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAAAGAGAGCAACAA
TGGCTGGGAAGAAGAAAACCTGATGAGTGCTTTAGGGAGAAAGAAGGAAT
AAGTTTGTGACTATTCAGTATATTCAGTATATTCAGTATGAAAAGCTTAT
TCCGTGCTTCGAGTTGAAGGGAAGAGGCAGATGAATGAATTTAATGTGAG
GCTCAGAACTGGTTGTATAGATTTGTTTGCCAATGAAACAAAGTATGGAA
ATAGATGGTATCTCTTTACAAGAGGACAGTCTTGTGACATGTATTCTCTC
CTATATAGAAGCTGGGAAGACTAGGAAGGGCCTCTGAATGAGAGAAAAGT
GACCGTTTGAAAAAAAGCTTCACCAAGTCGGGATTTTCATCCTAGATACC
AACTGGATAAAAAGTGGTTCATAAAGTGAGGCAAACTTCTCTCTGTCAAG
AGTTGCTTATTGCGCAAATGATTACTTAGGCCATTGTGCATGCTACTTGC
AGTCTGATATATTATTTCCATGTTTAGCGTCTATCACTCCTTTTCTTCCT
TTTACCTTTGCCCGTATTTGTTACTTTGTGATTTCTGTTTTCATCCTCAC
ATTGTTTTACCTAAGTTTTATTAAAATTGTTTTTTTTCCTAATTTGCTTA
TTTTCTTTATTTCTTTGGTTACCCTTTTTTATTGACTCTTTATTCACAAT
ATTTTGTTAATTTTTTCATATA

Query= MSMg01no449_c04.b1 MSMg01no449_c04.b1 CHROMAT_FILE:
MSMg01no449_c04.b1 PHD_FILE: MSMg01no449_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:39 2005
         (489 letters)



>mm_chr12_120508641_120509529
          Length = 889

 Score =  915 bits (473), Expect = 0.0
 Identities = 485/489 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cataggttggaaatactaaaaattaaaggtagaagtttcccatggagatgaaggttcagg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 689 cataggttggaaatactaaaaattaaaggtagaagtttccaatggagatgaaggttcagg 630

                                                                       
Query: 61  aagaagggaaggtggagacttggtctaaatgctagcagagctgattacggattggaaaac 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaaaagggaaggtggagacttggtctaaatgctagcagagctgattacggattggaaaac 570

                                                                       
Query: 121 ttaaaaacttactatagagcaaagcctaatggtgatgcttgagataggttctttcagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ttaaaaacttactatagagcaaagcctaatggtgatgcttgagataggttctttcagcag 510

                                                                       
Query: 181 gctaatatacaaggatgcaaagaataagcagggaggtaaagattaattggccaccccaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gctaatatacaaggatgcaaagaataagcagggaggtaaagattaattggccaccccaaa 450

                                                                       
Query: 241 cttaggatacctatttttaagtattttatcttttcctttttctctaggaatgtaagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cttaggatacctatttttaagtattttatcttttcctttttctctaggaatgtaagggtt 390

                                                                       
Query: 301 ttgtttattgtcatattaaaaaaatcaccagtgtataatcctaatgatgcttaataagga 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ttgtttattgtcacattaaaaaaatcaccagtgtataatcctaatgatgcttaataagga 330

                                                                       
Query: 361 cgttatatgcataaagacatcttatgtatgtacatcatttatttgaccatattcacacct 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cattatatgcataaagacatcttatgtatgtacatcatttatttgaccatattcacacct 270

                                                                       
Query: 421 ttctccctttcctgctacttcctttatttttccaaaacatctttctgtacgtgttctttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ttctccctttcctgctacttcctttatttttccaaaacatctttctgtacgtgttctttg 210

                    
Query: 481 cacttaatg 489
           |||||||||
Sbjct: 209 cacttaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_c04.g1 MSMg01no449_c04.g1 CHROMAT_FILE:
MSMg01no449_c04.g1 PHD_FILE: MSMg01no449_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:40 2005
         (312 letters)



>mm_chr12_120331134_120331845
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaaaagagagcaacaatggctgggaagaagaaaacctgatgagtgctttagggagaaa 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaaaagagagcaacagtggctgggaagaagaaaacctgatgagtgctttagggagaaa 260

                                                                       
Query: 61  gaaggaataagtttgtgactattcagtatattcagtatattcagtatgaaaagcttattc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggaataagtttgtgactattcagtatattcagtatattcagtatgaaaagcttattc 320

                                                                       
Query: 121 cgtgcttcgagttgaagggaagaggcagatgaatgaatttaatgtgaggctcagaactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtgcttcgagttgaagggaagaggcagatgaatgaatttaatgtgaggctcagaactgg 380

                                                                       
Query: 181 ttgtatagatttgtttgccaatgaaacaaagtatggaaatagatggtatctctttacaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgtatagatttgtttgccaatgaaacaaagtatggaaatagatggtatctctttacaag 440

                                                                       
Query: 241 aggacagtcttgtgacatgtattctctcctatatagaagctgggaagactaggaagggcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacagtcttgtgacatgtattctctcctatatagaagctgggaagactaggaagggcc 500

                       
Query: 301 tctgaatgagag 312
           ||||||||||||
Sbjct: 501 tctgaatgagag 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)