BAC Information

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BAC

Clone NameMSMg01-449G15
Chromosome12 (Build37)
Map Location 45,443,829 - 45,610,348
singlet/doubletdoublet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-449G15.T7 (MSMg01no449_g15.b1)MSMg01-449G15.TJ (MSMg01no449_g15.g1)
ACCAG537392AG537393
length732740
length of high quality
(start - end)		578 (82 - 659)513 (80 - 592)
definitionCHROMAT_FILE: MSMg01no449_g15.b1 PHD_FILE: MSMg01no449_g15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:02 2005CHROMAT_FILE: MSMg01no449_g15.g1 PHD_FILE: MSMg01no449_g15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,609,771 - 45,610,348)(45,443,829 - 45,444,341)
sequence
NTTTTTNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXGCCGCGGAATTCATTAGTATGCCACAGTAAGAACGTAAAAGCTGTGT
TTGCCTAGACATCATATAAATGTGCAGAGATGCCTGACACAGGTGCTAAG
AGAAACACGAAGTTTCTAAATATGTGTAAAACACATAGTTGTTTGTGGGT
GACCATGTACCATAATCCCTGCCACACAAAAGTGGGGTGAGGGGGAAGTG
AAGACAGTGAGATCCATCTTTCATACAACACTGCATAACCAGGCCAGCTA
GAGAGTGGTCCTGAAATACAGCCCAGTAAATGTTTTATGACAGAGGACAC
AGTGATGGCAATCCTTTAAATTCCCTGAGATGAGATCTAGTACTTGGAAT
TGTCTGGAGAAATCCTCCTCCATTCTTCTCAAATACAAAGGTGACACTTG
ATGCTGAGAACCGCCCTACTGCTTTACAAATGTTTTGGCTTATTTTAGTT
GAGACAACTTTACAAAGCACAGTTTCTTTCCCCATCTCACAGGAGAGAAA
ACAGGAAGGTCAGTGTGGAAAGTTGTTCACTCAGGCTCATGCTGAGAACT
CCACACAGACCGGGAACTAGGCTAGGCCTAGTGATAAAGTAAAGACACGG
ACAGAAGCTAAGGAGGGAACCTGAAAGTCAGAGAACAAGATGCAGCACTC
AAAAAAATTAACACAAATCATTCTTTACACAN

NNNNNNCCGATGATAGGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCATGTATGTAATAGTATTTG
TGTGGAGAGGGTTATTTTCATTACCAGCCAAATGAATGCAGTTGGTAGTT
TAACTGGCTGAGGACTCTTGGTAATGAACAACTTAGCTCCAACTTTGCGG
TTTTTATCAAGTATAAATTGTAATCACCTGGGTACATTTTTGTGGAAGCC
TCTGCAGGCGTCTTACTGCTCCTTGCTAATTAGAAGGCTCCTTTTGATAC
GTGAAATGATAAGCTGTTGATATTTTCTCATGCTGAGGAACTCACAGCTT
GGATGAGCTCTCAGACAACTTCAGGGTGAACACTACTTTGAATTTCATAG
TTCACAATAAGCAAGCAGCAACACTGACTGTTCAAAGAAGCCAGATTGCT
GAGTGCTTTGAATAGACTTGAGTACTGGTTTGAATATAAAGCAAATTCTG
GAACCAATTCAGAGGACCTTTTGTGATGTATGCTCAGTTGGGAGTGAATG
GCTGTTCCTCCTTTCCTCTAAAAACAGCCTTGCTTCTCTTAGGCACTAAG
CTCCTCTAGAGCAGTAACCCTGGCTATAGTCCTTTGCATGGTGCTTAATG
AGCATCTCAATCCTAAAATTGGGCCAAAGTGTTTTAAATAATACCAAAAA
ATATTTGGGAGGGGAAATCCTATGAAAGAATCGCCCTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no449_g15.b1 MSMg01no449_g15.b1 CHROMAT_FILE:
MSMg01no449_g15.b1 PHD_FILE: MSMg01no449_g15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:02 2005
         (578 letters)



>mm_chr12_45609571_45610548
          Length = 978

 Score = 1102 bits (570), Expect = 0.0
 Identities = 576/578 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagaacgtaaaagctgtgtttgcctagacatcatataaatgtgcagagatgcctgacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 aagaacgtaaaagctgtgtttgcctagacatcatataaatgtgcagagatgcctgacaca 719

                                                                       
Query: 61  ggtgctaagagaaacacgaagtttctaaatatgtgtaaaacacatagttgtttgtgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ggtgctaagagaaacacgaagtttctaaatatgtgtaaaacacatagttgtttgtgggtg 659

                                                                       
Query: 121 accatgtaccataatccctgccacacaaaagtggggtgagggggaagtgaagacagtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 accatgtaccataatccctgccacacaaaagtggggtgagggggaagtgaagacagtgag 599

                                                                       
Query: 181 atccatctttcatacaacactgcataaccaggccagctagagagtggtcctgaaatacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atccatctttcatacaacactgcataaccaggccagctagagagtggtcctgaaatacag 539

                                                                       
Query: 241 cccagtaaatgttttatgacagaggacacagtgatggcaatcctttaaattccctgagat 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 cccagtaaatgtggtatgacagaggacacagtgatggcaatcctttaaattccctgagat 479

                                                                       
Query: 301 gagatctagtacttggaattgtctggagaaatcctcctccattcttctcaaatacaaagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 gagatctagtacttggaattgtctggagaaatcctcctccattcttctcaaatacaaagg 419

                                                                       
Query: 361 tgacacttgatgctgagaaccgccctactgctttacaaatgttttggcttattttagttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgacacttgatgctgagaaccgccctactgctttacaaatgttttggcttattttagttg 359

                                                                       
Query: 421 agacaactttacaaagcacagtttctttccccatctcacaggagagaaaacaggaaggtc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agacaactttacaaagcacagtttctttccccatctcacaggagagaaaacaggaaggtc 299

                                                                       
Query: 481 agtgtggaaagttgttcactcaggctcatgctgagaactccacacagaccgggaactagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agtgtggaaagttgttcactcaggctcatgctgagaactccacacagaccgggaactagg 239

                                                 
Query: 541 ctaggcctagtgataaagtaaagacacggacagaagct 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 ctaggcctagtgataaagtaaagacacggacagaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no449_g15.g1 MSMg01no449_g15.g1 CHROMAT_FILE:
MSMg01no449_g15.g1 PHD_FILE: MSMg01no449_g15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:02 2005
         (513 letters)



>mm_chr12_45443629_45444541
          Length = 913

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcatgtatgtaatagtatttgtgtggagagggttattttcattaccagccaaatgaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcatgtatgtaatagtatttgtgtggagagggttattttcattaccagccaaatgaatgc 260

                                                                       
Query: 61  agttggtagtttaactggctgaggactcttggtaatgaacaacttagctccaactttgcg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 agttggtagtttaactggctgaggactcttggtaatgatcaacttagctccaactttgcg 320

                                                                       
Query: 121 gtttttatcaagtataaattgtaatcacctgggtacatttttgtggaagcctctgcaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttttatcaagtataaattgtaatcacctgggtacatttttgtggaagcctctgcaggc 380

                                                                       
Query: 181 gtcttactgctccttgctaattagaaggctccttttgatacgtgaaatgataagctgttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcttactgctccttgctaattagaaggctccttttgatacgtgaaatgataagctgttg 440

                                                                       
Query: 241 atattttctcatgctgaggaactcacagcttggatgagctctcagacaacttcagggtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atattttctcatgctgaggaactcacagcttggatgagctctcagacaacttcagggtga 500

                                                                       
Query: 301 acactactttgaatttcatagttcacaataagcaagcagcaacactgactgttcaaagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acactactttgaatttcatagttcacaataagcaagcagcaacactgactgttcaaagaa 560

                                                                       
Query: 361 gccagattgctgagtgctttgaatagacttgagtactggtttgaatataaagcaaattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccagattgctgagtgctttgaatagacttgagtactggtttgaatataaagcaaattct 620

                                                                       
Query: 421 ggaaccaattcagaggaccttttgtgatgtatgctcagttgggagtgaatggctgttcct 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaactaattcagaggaccttttgtgatgtatgctcagttgggagtgaatggctgttcct 680

                                            
Query: 481 cctttcctctaaaaacagccttgcttctcttag 513
           |||||||||||||||||||||||||||||||||
Sbjct: 681 cctttcctctaaaaacagccttgcttctcttag 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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