BAC Information

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BAC

Clone NameMSMg01-450A09
Chromosome12 (Build37)
Map Location 47,665,049 - 47,665,581
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664952
Downstream geneNova1, LOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450A09.T7 (MSMg01no450_a09.b1)MSMg01-450A09.TJ (MSMg01no450_a09.g1)
ACCAG537853AG537854
length738754
length of high quality
(start - end)
250 (70 - 319)540 (76 - 615)
definitionCHROMAT_FILE: MSMg01no450_a09.b1 PHD_FILE: MSMg01no450_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:48 2005CHROMAT_FILE: MSMg01no450_a09.g1 PHD_FILE: MSMg01no450_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGTTTCGCCTGGTCGAGAGAGAGAGACAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGACAGAGACAGAGACAG
AGACAGAGACAGAGAGACAGAGAGAGAGAAAGTTTTAGGACACCTAGGGG
TACAAGGAGAAAACCTGTCTCAAAAAGAAAAACAGACAAAAATGTGTGAA
ATATATATATATATATATATATATATATATATATATATATAGTCAATACA
TCCTTTAGCACAGTTTGATTTTTTTTATCAATAGATGGTGGTGGTTACTG
TTTCTCTAGTCAACATGAAATGTCTCCTCACCAGAGGAAGCTCGATTAGA
AATTGCCAGTGAACAATGACCGTGGTTTGAAAGCTAGAACTTCAGAGATT
TTCTAAATCTAAATTTTCTGTTGCTTATTGAAAAAAGTGAAAAACGTTAG
ACTATGCGCTACGAGTATAGGGAACTTGTGGGTTACAAATGGGTTATGAG
GACAAACCGAGAATCTGTAGAAATGGATACAGAATTACTTTGACATTCTG
AATTTTAGTTCTAGTCTGCTCCTTGGTAATTTTACTATTCTAAACCAAGA
ATTAGAACCCTACATGTGAGCAGGCTCTGACTGAACTATAGTGGTTTTGC
TCCAAAATACAGCATGTTGAGACGTGTCTGCGATTTGN
GCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAAGGCTGGAAAGTGATTAAGAGC
ACTGGCTGCTCTTGGGAGGAGTAAGATTCAATTTCCAGTACCAACATCAT
GACTGACAACCATCTGTAATGCCAGTTCCAAGGGAACCAATATCCTCTTA
TGACTGACACAGGCACAAGGCACACACCTAGCAAACAGATATACCTGCAG
CTAGAACATTAACATAAATAAAATAAAATATTTTTTTTACAAATAAAAAA
AAATACCACAGTCATTGTTTCTGTATAGTGTTTCTGGCCACACTTCTTAA
TGAAACTTTACTGTAATTAGACAAAATACAAGACTCCCTCAAAGAAGGAG
TGTTGGTGTCTTCTTCAATACTATCCTAGATTTTTTAAATCATAGCCAAA
GACATAACTCCCAGAGCATATGCCTACTTCTAAAAATCCCCGTAGAGAAT
GTTGTATGACTCCCCAAAAGGCACTAAACAAGTCAGAACAAATTCAAAAG
GAAAGTGGCTTTCTTATGAATGACTCCTGGCCTTCACCATCATGTGGTAG
ATTCTGACTATGGCACTTCAATGCCTCGTTTGCAATGAAGGAAGAAACAA
CTCATCCTATAACATGTCTCACACACACACACACTCTCTCTTCTTATATA
GAGAGATAGAGAGAGATTTACATATCCTCTTATTTATCCTCTTTTCCTCC
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_a09.g1 MSMg01no450_a09.g1 CHROMAT_FILE:
MSMg01no450_a09.g1 PHD_FILE: MSMg01no450_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:48 2005
         (540 letters)



>mm_chr12_47664643_47665581
          Length = 939

 Score =  949 bits (491), Expect = 0.0
 Identities = 524/535 (97%), Gaps = 2/535 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   gctggaaagtgattaagagcactggctgctcttgggaggagtaagattcaatttccagta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 gctggaaagtgattaagagcactggctgctcttgggaggagtaagattcaatttccagta 880

                                                                       
Query: 66  ccaacatcatgactgacaaccatctgtaatgccagttccaagggaaccaatatcctctta 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ccaacatcatgactgacaaccatctgtaatgccagttccaagggaaccaatatcctctta 820

                                                                       
Query: 126 tgactgacacaggcacaaggcacacacctagcaaacagatatacctgcagctagaacatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 tgactgacacaggcacaaggcacacacctagcaaacagatatacctgcagctagaacatt 760

                                                                       
Query: 186 aacataaataaaataaaatattttttttacaaataaaaaaaaataccacagtcattgttt 245
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aacataaataaaataaaata-tttttttacaaataaaaaaaaataccacagtcattgttt 701

                                                                       
Query: 246 ctgtatagtgtttctggccacacttcttaatgaaactttactgtaattagacaaaataca 305
           ||| | ||||||||||||  |||||||||||||||||||||||| |||||||||||||||
Sbjct: 700 ctggaaagtgtttctggctgcacttcttaatgaaactttactgttattagacaaaataca 641

                                                                       
Query: 306 agactccctcaaagaaggagtgttggtgtcttcttcaatactatcctagattttttaaat 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agactccctcaaagaaggagtgttggtgtcttcttcaatactatcctagattttttaaat 581

                                                                       
Query: 366 catagccaaagacataactcccagagcatatgcctacttctaaaaatccccgtagagaat 425
           |||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 580 catagccaaagacatagcccccagagcatatgcctacttct-aaaatccccgtagagaat 522

                                                                       
Query: 426 gttgtatgactccccaaaaggcactaaacaagtcagaacaaattcaaaaggaaagtggct 485
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 gctgtatgactccccaaaaggcactaaacaagtcagaacaaattcaaaaggaaagtggct 462

                                                                  
Query: 486 ttcttatgaatgactcctggccttcaccatcatgtggtagattctgactatggca 540
           | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tccttatgaatgactcctggccttcaccatcatgtggtagattctgactatggca 407


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 939
Length adjustment: 10
Effective length of query: 530
Effective length of database: 929
Effective search space:   492370
Effective search space used:   492370
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)