BAC Information

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BAC

Clone NameMSMg01-450F19
Chromosome12 (Build37)
Map Location 14,354,716 - 14,355,291
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F19.T7 (MSMg01no450_f19.b1)MSMg01-450F19.TJ (MSMg01no450_f19.g1)
ACCAG538110AG538111
length736773
length of high quality
(start - end)
510 (48 - 557)559 (75 - 633)
definitionCHROMAT_FILE: MSMg01no450_f19.b1 PHD_FILE: MSMg01no450_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:15 2005CHROMAT_FILE: MSMg01no450_f19.g1 PHD_FILE: MSMg01no450_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAGGTTCCCTTATATATATTACCATATCATCTGCAAATAGTG
ACATTTTGACTTCATACTTTCAAATTTATATCCCCTTGAATTCCTTTTGA
TGTCTAATTGCTCTGGCTAGGACCTCGAGTACTATATTGATTAGGTAGGG
AGAACGTGGGCAACCTTGTCTTGTCCCTGGCTTTAGTAAGATTGCTTCCA
GCTTCTCTCCATTTAGTTTGATGTTGGCTACCTGTTTACTATAGATTGCT
TTTATTATATTTAGTTATTTTCCTTGAATTCCTGATCTTTCCAAAACTAT
TATCATGAAGAGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATTAACAA
GATGATCATGTGTTTTTTGTCTTTGAGTTTATTTATGTAGTAGATTATGT
TGATGGAATTTCGTATATTAAGCCATCCCTGCATCCCTGGAATGAAGCCT
ACTTGGTCAGAATGGATGATTGTTTTGATGTGCTCTTGGATTCAGTTTGG
GAGAATTTTATTGAGTATTTTTGCATCGATATTCTTAAAGGAAATCAGTC
TGAAATTCTCTATTTTTGTTGCGCCCTTATGCAGTCTATGTATCACAGTT
ATTGGTGCCTTCATAGAATAAATTGGGTAAAGCACCTTTTCTTTCTATTT
TATGGAATACTTTGAGATGAACTGGATTTATGTCTC
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCCCATGACTTCCCTCACTGATGTA
CTATGATGGGGAAATGTAAGCCAAGTTTAACCTCTTCTTCTTCGTTTGTT
TTGGCCACTGTTTTATCACAGCAGCAAGAAACCAAACTAAAACACACACA
CACACACACACACACAAGACAAAATCGGAAATAAATTTTAAAACATCAAA
AACTGACCAATGACTTCTCTTTAAAATAAAATTTCCTGGTCATTTTAGGA
AAAAAACCTATAAACGCTTCCATGTTATCACTCTAAACAACACCTATTTG
TTTGTTTATAAGAACTGACAGAGTCACTTATATACAACCACCAAACCCAG
ACACTATTGCATATGCCAGCAAGATTTTGCTGACGGGACCCAAAATATAG
CTATCTTTTGTGAGGCTATGACAGTACCTGGCAAATACAGAAGTGGGTGC
CCTCAGTCATTTATTGGATGGAACACAAGTCCCCCAGTGAAGGAGCTAGA
GAAAGTACCCAAGGAGCTAAAGGGCTCTGCAACCCTACAGGAGGAACAAC
AATATGAACTGACCAGTACCCCACACAGCTTGTGTCTCTAGTTACATATG
TAACAGAGGATGGTCTAGTCGGTCATCAATGGAAGAAGAGGCCCCTTGGT
CTTGCAAAGATATATGCCCCAGTAACAAGCGAATGCCACGCCCACGAAAC
AAGAATGTGTGGCTTGTTGTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f19.g1 MSMg01no450_f19.g1 CHROMAT_FILE:
MSMg01no450_f19.g1 PHD_FILE: MSMg01no450_f19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:15 2005
         (559 letters)



>mm_chr12_14354533_14355491
          Length = 959

 Score =  919 bits (475), Expect = 0.0
 Identities = 542/577 (93%), Gaps = 22/577 (3%)
 Strand = Plus / Plus

                                                                       
Query: 4   ccatgacttccctcactgatgtactatgatggggaaatgtaagccaagtttaacctcttc 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ccatgacttccctccctgatgtactatgatggggaaatgtaagccaagtttaacctcttc 243

                                                                       
Query: 64  ttcttcgtttgttttggccactgttttatcacagcagcaagaaaccaaactaaa------ 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 244 ttcttcgtttgttttggccactgttttatcacagcagcaagaaaccaaactaaaacacac 303

                                                                       
Query: 118 --------------acacacacacacacacacacacacaagacaaaatcggaaataaatt 163
                         ||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 304 acacacacacacacacacacacacacacacacacacacaaggcaaaatctgaaataaatt 363

                                                                       
Query: 164 ttaaaacatcaaaaactgaccaatgacttctctttaaaataaaatttcc-tggtcatttt 222
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 364 ttaaaacatcaaaaactgaccaatgacttctctttaaaataaa-tttccctggtcatttt 422

                                                                       
Query: 223 aggaaaaaaacctataaacgcttccatgttatcactctaaacaacacctatttgtttgtt 282
           |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 423 aggaaagaaacctataaacgcttccatgggatcactctaaacaacacctatttgtttgtt 482

                                                                       
Query: 283 tataagaactgacagagtcacttatatacaaccaccaaacccagacactattgcatatgc 342
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 483 tataagaactgacagagtcacttatctacaaccaccaaacccagacactattgcatatgc 542

                                                                       
Query: 343 cagcaagattttgctgacgggacccaaaatatagctatcttttgtgaggctatgacagta 402
           |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 543 cagcaagattttactgacgggacccaaaatatagctatcttctgtgaggctatgacagta 602

                                                                       
Query: 403 cctggcaaatacagaagtgggtgccctcagtcatttattggatggaacacaagtccccca 462
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 603 cctggcaaatacagaagtgggtgccctcagtcatctattggatggaacacaagtccccca 662

                                                                       
Query: 463 gtgaaggagctagagaaagtacccaaggagctaaagggctctgcaaccctacaggaggaa 522
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 663 gtgaaggagctagggaaagtacccaaggagctaaagtgctctgcaaccctacaggaggaa 722

                                                
Query: 523 caacaatatgaactgaccagtaccccacacagcttgt 559
           ||||||||||||||||||||||||||||| |||||||
Sbjct: 723 caacaatatgaactgaccagtaccccacagagcttgt 759


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space:   521001
Effective search space used:   521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)