Query= MSMg01no450_f21.b1 MSMg01no450_f21.b1 CHROMAT_FILE:
MSMg01no450_f21.b1 PHD_FILE: MSMg01no450_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:16 2005
(272 letters)
>mm_chr12_99444566_99445237
Length = 672
Score = 447 bits (231), Expect = e-130
Identities = 261/277 (94%), Gaps = 14/277 (5%)
Strand = Plus / Minus
Query: 5 gaattctcatttt---ttcctgtttattagttagagttgaggaccgagttgggatgtgag 61
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gaattctcattttaagt---tgtttattagttagagttgaggaccgagttgggatgtgag 343
Query: 62 gtagtttatttgaccatactcttcctagtgcacataatttgcaccacttcatagccaccc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtagtttatttgaccatactcttcctagtgcacataatttgcaccacttcatagccaccc 283
Query: 122 ctgctgggcatgtgtggattctgtccggcttgagcttgcacaggtctcatttgtggtgca 181
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ctgctgggcatgcgtggattctgtccggcttgagcttgcacaggtctcatttgtggtgca 223
Query: 182 acaattgttgtgatttcat--gtgtgtgtgtgtgtgtgtgt----gtgtgtatgtgtgtg 235
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 222 acaattgttgtgatttcatatgtgtgtgtgtgtgtgtgtgtatgtgtgtgtatgtgtgt- 164
Query: 236 tatctcccctgctatgttcagagaacagttttcctta 272
|||||||||||||||| |||||||||||||||||||
Sbjct: 163 -atctcccctgctatgtccagagaacagttttcctta 128
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_f21.g1 MSMg01no450_f21.g1 CHROMAT_FILE:
MSMg01no450_f21.g1 PHD_FILE: MSMg01no450_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:16 2005
(525 letters)
>mm_chr12_99290868_99291791
Length = 924
Score = 934 bits (483), Expect = 0.0
Identities = 514/525 (97%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 1 agaaaaaatggtttcagttaaaacccatctataacttctccctctcacgaaaacacatta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaaaatggtttcagttaaaacccatctataacttctccctctcacgaaaacacatta 260
Query: 61 agatggcagtaaaggaactattcagagtataaaaccctagcagacaaagagaatgggagg 120
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctggcagtaaaggaactattccgagtataaaaccctagcagacaaagagaatgggagg 320
Query: 121 aggacttgaaatcttttcaaattcaacaaatttgagcaacataataaagcaattggagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggacttgaaatcttttcaaattcaacaaatttgagcaacataataaagcaattggagaa 380
Query: 181 gcagagatggaacgagtactggaggaggccacagtgttatggagacagagttcacgcaat 240
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 gcagagatggagcgagtactggaggaggccacagtgttacggagacagagttcacgcaat 440
Query: 241 ggagcctttgatatctgtagaattgggcgacagcagatttcatgaaaatgaagagtgatg 300
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ggagcctttgatagctgtagaattgggcgacagcagatttcatgaaaatcaagagtgatg 500
Query: 301 ctaacggcccaaaccacagtttattagtttgtcaaaaatgccatactggggtctgctgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctaacggcccaaaccacagtttattagtttgtcaaaaatgccatactggggtctgctgac 560
Query: 361 tagatgatggcctcactttagatctataatgttttttcccaagggctcatgtcttacaca 420
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 561 tagatgatggcctcactttagatctataatgttctt-cccaagggctcatgtcttacaca 619
Query: 421 cttagtcagctgcttggcactgctggaaggtggtggacccttttaagatttggaattttt 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 620 cttagtcagctgcttggcactgctggaaggtggtggacgcttttaagatttggaattttt 679
Query: 481 taagtcattgagggtatgccctannaggggaagaagggaaaattg 525
||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 680 taagtcattgagggtatgccctaaaaggggaagaagggaaaattg 724
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 924
Length adjustment: 10
Effective length of query: 515
Effective length of database: 914
Effective search space: 470710
Effective search space used: 470710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
