BAC Information

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BAC

Clone NameMSMg01-450L06
Chromosome12 (Build37)
Map Location 37,234,867 - 37,235,409
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik
Downstream geneLOC638858, Meox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450L06.T7 (MSMg01no450_l06.b1)MSMg01-450L06.TJ (MSMg01no450_l06.g1)
ACCAG538369AG538370
length909734
length of high quality
(start - end)
39 (76 - 114)543 (81 - 623)
definitionCHROMAT_FILE: MSMg01no450_l06.b1 PHD_FILE: MSMg01no450_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:43 2005CHROMAT_FILE: MSMg01no450_l06.g1 PHD_FILE: MSMg01no450_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCATAATTTCGCGGCGCTAAACGACTCACTATTTCGCATGAGAGCGC
GGAATCAAAGGGTTACTATCACATAAAGCCATACACAATATCTTAGTACT
CCTATGGAGAGATGGTATTTGAAGACTAGAGAATCGCCAGAAGCTCAAGA
AACAGCCTGGAATATGTGTGCATATATGTGCATGTGTGTGTGTGTGCCCG
CCCTCCGTCTTTCCTTCTCTTACCCCCTTTCCCTCTCTCTCTCCTCTTTT
CTCTTTTTTCCCCTTCCCCTTCCCTCTTTTCCCCTCCTCCCCTTTTTCTC
CTTTCCCCTTCTCCCTCCCTTCCTCTTCTTTTTTTTTTCCACCCCTTTTC
TCCCCCTTTTCCTTCCCTTTCTCACTTTCCTTCTTTCTTCCTCCCTCTTC
CTCATCCCCCACTTCTCTTACCCTCCCCTTCTTTCATTTTTCCCCTTTTC
TCCCCCCCTTTTTCCCCTTTCCTTCCCCCTATTTTCTTTTTTCCCCATCC
TCCCCCTCCTCTTTATTCTATCTTACTTTTCTTCTTCTTGCTTTCTCTTC
CTTCTTTTTGCCTTTTTTCTCCTCCTCTCTTCTCCCCCCTTTCTTTTTCT
TCTTCCTCCTCCCTCTCCTCCCCCCCCCCCCCCTTTTCCCTCTTTCCTCA
TTTTCTCTCCCCTCCACATTCAAGCTGTCCTTCTATCTCCCCACCCCTCC
CCCTCCTTTTTATATACACATCCCTCTTCTTTCCTCCCCCCCTCCCTTTT
CTTCTTTTTTCTTCCCCACCCTTTTCCTTTCCTCCCCTTTCTTCTCCCTT
CTTTCTTTCCCTTCTTCTTCCTTTTCCCTTTCCCTCCTANTCTCCTATTC
TCTCTCTCTCATACACCATCTTGTTTTCCTTTTCCCTCCTCTATCCTCCT
TCCCCCTTN
CCCAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGTAATGGGTTAATTGG
TAAAGGAAATTTCAAGACAAATGATACATTTAGTCTCTACCACTGTCTAG
AGCCAGATTTATAGTCAGAGATGAGAGAAAGTGGAGCAGAAAGACGTGAA
AATCATGCATGCTAGCAAGGAAAGGGCCATGCGCACAAAGTAGTTTTGGG
CAAAGCAGAGTTCCCATTATGAATACTGGCCTAAAGAGAACCCTTGCACT
GTCCTTTGCAGTGGCAGCGGGAATGTTGTTTTATGAAGAAAGCGTTCTCT
TGGTTCCTCGACATTGACATAGAAGGTTACAGTTATGATAGAAAGTAGTC
CCTCTTGTGGCTCATCTTCATCTAGAGCTTGTAGCAGGGTTTGGCATTGT
CCACAGGGTGCTTGTTTTACTAGCATGCACAATGTATGGAAGTTTGCACC
AAGGTTTTAGAAAGCTCCTATGGTAATCTGTCCCTGCACAGATGAGCTTC
TTGGTGGGTCAAACATGGAGCTGTAAGTTAAAGGCCATGGTACCATGTTG
TTGGAGATAGCACGACTCTTGAGGATCTGCTTCAGTGACTGTATATTGCT
CTAGACAGTGTGTGTGTGGTGCTTGCTATCCCCATGGTGCGAGTAATCTG
TATCCCTGATGATTTTATCCTGATTTTTCGACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_l06.g1 MSMg01no450_l06.g1 CHROMAT_FILE:
MSMg01no450_l06.g1 PHD_FILE: MSMg01no450_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:43 2005
         (543 letters)



>mm_chr12_37234667_37235609
          Length = 943

 Score =  949 bits (491), Expect = 0.0
 Identities = 530/547 (96%), Gaps = 8/547 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtaatgggttaattggtaaaggaaatttcaagacaaatgatacatttagtctctac 60
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 agaagtaatgggataattggtaaaggaaatttcaagacaaatgaaacatttagtctctac 260

                                                                       
Query: 61  cactgtctagagccagatttatagtcagagatgagagaaagtggagcagaaagacgtgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactgtctagagccagatttatagtcagagatgagagaaagtggagcagaaagacgtgaa 320

                                                                       
Query: 121 aatcatgcatgctagcaaggaaagggccatgcgcacaaagtagttttgggcaaagcagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatcatgcatgctagcaaggaaagggccatgcgcacaaagtagttttgggcaaagcagag 380

                                                                       
Query: 181 ttcccattatgaatactggcctaaagagaacccttgcactgtcctttgcagtggcagcgg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| 
Sbjct: 381 ttcccattatgaatactggcctaaagagaacccttgaactgtcctttgcagtggcagcgt 440

                                                                       
Query: 241 gaatgttg----ttttatgaagaaagcgttctcttggttcctcgacattgacatagaagg 296
           ||||| ||        |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 gaatggtggcca----atgaagaaagtgttctcttggttcctcgacattgacatagaagg 496

                                                                       
Query: 297 ttacagttatgatagaaagtagtccctcttgtggctcatcttcatctagagcttgtagca 356
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttacagtcatgatagaaagtagtccctcttgtggctcatcttcatctagagcttgtagca 556

                                                                       
Query: 357 gggtttggcattgtccacagggtgcttgttttactagcatgcacaatgtatggaagtttg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gggtttggcattgtccacagggtgcttgttttactagcatgcacaatgtatggaagtttg 616

                                                                       
Query: 417 caccaaggttttagaaagctcctatggtaatctgtccctgcacagatgagcttcttggtg 476
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 617 caccaaggttttagaaagctcctatggtaatctgttcctgcacagatgagcttcttggtg 676

                                                                       
Query: 477 ggtcaaacatggagctgtaagttaaaggccatggtaccatgttgttggagatagcacgac 536
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 677 ggtcaaacatggagctgtaagttaaaggcaatggtaccatgttgttggagatagcacgac 736

                  
Query: 537 tcttgag 543
           |||||||
Sbjct: 737 tcttgag 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)