Query= MSMg01no451_i20.b1 MSMg01no451_i20.b1 CHROMAT_FILE:
MSMg01no451_i20.b1 PHD_FILE: MSMg01no451_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:50 2005
(596 letters)
>mm_chr12_93068883_93069878
Length = 996
Score = 1137 bits (588), Expect = 0.0
Identities = 591/592 (99%)
Strand = Plus / Minus
Query: 5 gaattctaatattttatgtctgcttaatttctgctggttttcttagtctatgtgtagaat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 gaattctaatattttatgtctgcttaatttctgctggttttcttagtctatgtgtagaat 737
Query: 65 tagaaaattctgagttatttgaatatttacctgacatgattataattttctactgtaaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 tagaaaattctgagttatttgaatatttacctgacatgattataattttctactgtaaat 677
Query: 125 cttgttaacctactacttggatttctcattcattgttagtgtaattaggtcattttaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 cttgttaacctactacttggatttctcattcattgttagtgtaattaggtcattttaaaa 617
Query: 185 tattagatataagggaaactggccccttagctaaatcaaactatccagcatgttttctac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tattagatataagggaaactggccccttagctaaatcaaactatccagcatgttttctac 557
Query: 245 atatataaataacacgagaaagtagaaataatgtgtggaaatttattattatacaataag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 atatataaataacacgagaaagtagaaataatgtgtggaaatttattattatacaataag 497
Query: 305 gaaattatgcttcacttggtaatgaaaaatcgtttaatggctgttctaaaatcactgctg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 gaaattatgcttcacttggtaatgaaaaatcgtttaatggctgttctaaaatcactgctg 437
Query: 365 actctctgtttcattgcttctgtttaaagagcatatcggtaccttcagaaggcagcaggc 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 actctctgtttgattgcttctgtttaaagagcatatcggtaccttcagaaggcagcaggc 377
Query: 425 atgaatcacaccaaagccctggagagagtgtcctatgctctcttgtttggtgattacctc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atgaatcacaccaaagccctggagagagtgtcctatgctctcttgtttggtgattacctc 317
Query: 485 acacagaatatccaggcagccaaagagatgtttgagaaactgactgaggaagggtctccc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 acacagaatatccaggcagccaaagagatgtttgagaaactgactgaggaagggtctccc 257
Query: 545 aaaggacagactgtaagtgcggctcttggtcgttgttggggttggggttgat 596
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaaggacagactgtaagtgcggctcttggtcgttgttggggttggggttgat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_i20.g1 MSMg01no451_i20.g1 CHROMAT_FILE:
MSMg01no451_i20.g1 PHD_FILE: MSMg01no451_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:50 2005
(578 letters)
>mm_chr12_92893147_92894124
Length = 978
Score = 1023 bits (529), Expect = 0.0
Identities = 570/589 (96%), Gaps = 11/589 (1%)
Strand = Plus / Plus
Query: 1 agattcccattcatgatagacacactaccctaggccacatctccagccctcaacacacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agattcccattcatgatagacacactaccctaggccacatctccagccctcaacacacac 255
Query: 61 acacacacacacacacacacacacacacacac--cttttttttt---aagtgactcaaga 115
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 256 acacacacacacacacacacacacacacacacaccttttttttttttaagtgactcaaga 315
Query: 116 attcttacatgaattcacctgagagaaaaacaagacaaacttgtcacaatgtacagaggg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 attcttacatgaattcacctgagagaaaaacaagacaaacttgtcacaatgtacagaggg 375
Query: 176 gatgtttatcatggcaatgtttatatgactgaaaaactataaacaatttcaacaacagga 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gatgtttatcatggcaatgtttatatgactgaaaaactataaacaatttcaacaacagga 435
Query: 236 aaactttctgtaaactgctagacccttaaaatggaatgccatgtcaccctcgaaacagca 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aaactttctgtaaactgctagacccttaaaatggaatgccatgtcaccctcgaaacagca 495
Query: 296 ttcaatgcaagtttatttgcacggaaggaaccatcacaggctcttgaggggaaatcaaga 355
||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 496 ttcaatgcaagtttattcgcacggaacgaaccatcacaggctcttgagggaaaatcaaga 555
Query: 356 ccctacaatctgaacttgaattgcttgtgttttaattatgtatcaggatcttacaaagct 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ccctacaatctgaacttgaattgcttgtgttttaattatgtatcaggatcttacaaagct 615
Query: 416 atttaacttcaggggcatctttaatgtgtgtctcagttttctatccatggatttaaggaa 475
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 616 atttaacttcaggggcatctttaatgtgtgtctcagttttccatccatggatttaaggaa 675
Query: 476 atattaattcctacctgataggccaagagcataacagttggtggctggtcttccatcact 535
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct: 676 atattaattcccacctgataggccaagagcataacagttggcggctggtcttccataact 735
Query: 536 aacagaagaatatttttcatttaaa------ccatgtgtgtgaaaacat 578
||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 736 aacagaagattatttttcatttaaaaagtaaccatgtgtgtgaaaacat 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
