Query= MSMg01no451_l05.b1 MSMg01no451_l05.b1 CHROMAT_FILE:
MSMg01no451_l05.b1 PHD_FILE: MSMg01no451_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:02 2005
(676 letters)
>mm_chr12_17664330_17665405
Length = 1076
Score = 574 bits (297), Expect = e-168
Identities = 303/305 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagacctttctggttgacatagcaaattctaggtcagtcagaggcatatacagt 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 gaattcaagaccagtctggttgacatagcaaattctaggtcagtcagaggcatatacagt 246
Query: 65 gatgccttttctcaaacaaacaacataaataggtttgaggaagtgggtaaagcgcttgcg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gatgccttttctcaaacaaacaacataaataggtttgaggaagtgggtaaagcgcttgcg 186
Query: 125 acaaatgggcgcctaagtttggatcccagcaaggaagtgaaaggcctgctgtgggagatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 acaaatgggcgcctaagtttggatcccagcaaggaagtgaaaggcctgctgtgggagatt 126
Query: 185 atgcctgtaaccccaggatcccagcactggggaggcagaggcaggaggacctctggggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atgcctgtaaccccaggatcccagcactggggaggcagaggcaggaggacctctggggtt 66
Query: 245 cactggccagtcattgtagccaaattggagagatccaggtttagtgatagaacttgtctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cactggccagtcattgtagccaaattggagagatccaggtttagtgatagaacttgtctt 6
Query: 305 aagac 309
|||||
Sbjct: 5 aagac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_l05.g1 MSMg01no451_l05.g1 CHROMAT_FILE:
MSMg01no451_l05.g1 PHD_FILE: MSMg01no451_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:02 2005
(554 letters)
>mm_chr12_17537372_17538325
Length = 954
Score = 986 bits (510), Expect = 0.0
Identities = 548/574 (95%), Gaps = 22/574 (3%)
Strand = Plus / Plus
Query: 1 agcagaaagagccaaatgatgccaaaataagataagtctgctttatccgagaagactctg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 183 agcagaaagagccaaatgatgccaaaataagataagtctgctctatccgagaagactctg 242
Query: 61 tcttgctcctggctcagttcgtggcagtggctcacaaaactgatgtttgcaaagcactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tcttgctcctggctcagttcgtggcagtggctcacaaaactgatgtttgcaaagcactca 302
Query: 121 aagcactgctctgccctcaagctacaggctagaccccaggtctcctaactcacagaatgc 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaacactgctctgccctcaagctacaggctagaccccaggtctcctaactcacagaatgc 362
Query: 181 tctcctgcagcacacacacacacacacacacacacacacacacacacacacacacacaca 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctcctgcag--cacacacacacacacacacacacacacacacacacacacacacacaca 420
Query: 241 cacactcatcactgctctggccgtggtaattc--------------------tcacttcc 280
|||||||||||||||||||||||||||||||| ||||||||
Sbjct: 421 cacactcatcactgctctggccgtggtaattctcacttcctcagactggctgtcacttcc 480
Query: 281 tcagactaggtgcatgtggcaatggggtctcaaggcacctctacttgcaggacagtgggc 340
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tcagactaggtgcatgtagcaatggggtctcaaggcacctctacttgcaggacagtgggc 540
Query: 341 cacaggctggtctgtgtgtggaggccttggtgatgccactgggagttgtccactggtgac 400
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cataggctggtctgtgtgtggaggccttggtgatgccactgggagttgtccactggtgac 600
Query: 401 ttcacagcgatgtaagtgtcacatgaacctcccctttgcctttagctccgaagctcagca 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttcacagcgatgtaagtgtcacatgaacctcccctttgcctttagctccgaagctcagca 660
Query: 461 acttttccaggccttacgcaggtcagcgtgtgctttccaaaagctaatggcagccaagag 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acttttccaggccttacgcaggtcagcgtgtgctttccaaaagctaatggcagccaagag 720
Query: 521 tcaatgcggtgtaattaggggtttggttttacga 554
||||||||||||||||||||||||||||||||||
Sbjct: 721 tcaatgcggtgtaattaggggtttggttttacga 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 27
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
