Query= MSMg01no452_b21.b1 MSMg01no452_b21.b1 CHROMAT_FILE:
MSMg01no452_b21.b1 PHD_FILE: MSMg01no452_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:35 2005
(547 letters)
>mm_chr12_60042080_60043028
Length = 949
Score = 443 bits (229), Expect = e-128
Identities = 321/375 (85%), Gaps = 46/375 (12%)
Strand = Plus / Minus
Query: 6 gaattccttaatctcttgttttacctgtcctaaaacccaaagccattttctaggaacaaa 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gaattccttaatctcttgttttacctgtcctaaaacccaaagccattttctaggaacaaa 333
Query: 66 tttagtatatccaggcagtagtagctagaatgttgcagagtaatttgttttatgtgcatg 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tttagtatatccaggcagtagtagctagaatgttgcagagtaatttgttttatgtgcatg 273
Query: 126 gggtattgctttttttttttttgtaagacctttcaagaga---ttttttttttgtaaatt 182
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 272 gggtattgc-ttttttttttttgtaagacctttcaagagatttttttttttttgtaaatt 214
Query: 183 tgtgaagattctttttcttttctccctttccctttcctttcctttcctttcctttccttt 242
|||||||||||||||||||||| |||||||||||||||
Sbjct: 213 tgtgaagattctttttcttttc------tccctttcctttcct----------------- 177
Query: 243 cctttcctttcctttcctttcctttcctttcctttccttttccttttccttttccttttc 302
|||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 176 --tttcct----tttcct----tttcct----tttccttttccttttccttttccttttc 131
Query: 303 cttttccttttccttttccttttccttttccttttcct-tttc-cttttcctttttcctt 360
|||| ||||| ||||| ||||| ||||| ||||| || |||| ||||| ||||||| ||
Sbjct: 130 ctttccctttccctttccctttccctttcccttt--ctctttctctttttctttttcttt 73
Query: 361 ttccttttc-ctttt 374
||| ||||| |||||
Sbjct: 72 ttctttttctctttt 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 133
Number of extensions: 28
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 949
Length adjustment: 10
Effective length of query: 537
Effective length of database: 939
Effective search space: 504243
Effective search space used: 504243
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_b21.g1 MSMg01no452_b21.g1 CHROMAT_FILE:
MSMg01no452_b21.g1 PHD_FILE: MSMg01no452_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:35 2005
(613 letters)
>mm_chr12_59860040_59861052
Length = 1013
Score = 992 bits (513), Expect = 0.0
Identities = 583/619 (94%), Gaps = 25/619 (4%)
Strand = Plus / Plus
Query: 1 caggacagccagggatacacagagaaaccctgtctcaaaaacaaaacaaaacaaaacaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 214 caggacagccagggatacacagagaaaccctgtctcaaaaacaaaacaaaa-aaaa---- 268
Query: 61 aggaatacacacagagttcatgaaacgcaagtcatgtaaataagtgtgggt------att 114
||||| |||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 269 aggaacacacacagagttcatgaaactcaagtcatgtaaataagtgtgggtgtgggtatt 328
Query: 115 tcctatctcactttctagaatgccttgatacaactttacaaccattatcacgtgatcatt 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcctatctcactttctagaatgccttgatacaactttacaaccattatcacgtgatcatt 388
Query: 175 aaaaacaatgaaaaaagctgggcggtggtggcacatgcctttaatcccagcacttgagag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 aaaaacaatgaaaaaagctgggcggtggtggcacatgcctttaatcccagcacttgagag 448
Query: 235 gcacaggcaggtggatttctgagttcgaggccagcctggtctacagagtgagttccagga 294
||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 449 gcagaggcaggtggatttctgagtttgaggccagcctggtctacaaagtgagttccagga 508
Query: 295 caatacagagaaaccttgtcttgaaaaaaacaaaaacaaaaaacaaaaaaaaaacaaaaa 354
|||||||||||||||||||||||||||||| ||| ||||||| ||||||
Sbjct: 509 caatacagagaaaccttgtcttgaaaaaaa----aac------caaaaaa----caaaaa 554
Query: 355 ataaaacaatacaatgaaaaaaaaccctgagctttcatacttttctcaataggaagacag 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ataaaacaatacaatgaaaaaaaaccctgagctttcatacttttctcaataggaagacag 614
Query: 415 gcaaatggccttttcaagtagacatatgtttcccacaagcaccgctgctctgtgagtctg 474
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 615 gcaaatggccttttcaaatagacatatgtttcccacaagcaccgaagctctgtgagtctg 674
Query: 475 tgctctttactctatactacctagcatttatgtcagatattctattgcgtagaccataaa 534
|||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||
Sbjct: 675 tgctctttactctatactacctagcacttatgtcagatattctattacatagaccataaa 734
Query: 535 caaatataaactaaacaaatctagaattagccagaatcccctccctgatggcttgctttt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caaatataaactaaacaaatctagaattagccagaatcccctccctgatggcttgctttt 794
Query: 595 gtaggtgctgtacctgcca 613
|||||||||||||||||||
Sbjct: 795 gtaggtgctgtacctgcca 813
Score = 122 bits (63), Expect = 8e-32
Identities = 122/149 (81%), Gaps = 17/149 (11%)
Strand = Plus / Plus
Query: 200 tggtg--gcacatgcctttaatcccagcacttgagaggcacaggcaggtggatttctgag 257
||||| ||||| ||||||||||||| ||||| |||||| ||||||| ||||||||||
Sbjct: 124 tggtggcgcaca--cctttaatcccaggacttgggaggcagaggcaggcagatttctgag 181
Query: 258 ttcgaggccagcctggtctacagagtgagttccaggaca-------ataca--gagaaac 308
|||||||||||||||||||||| | ||| |||||||||| ||||| |||||||
Sbjct: 182 ttcgaggccagcctggtctacaaactgaattccaggacagccagggatacacagagaaac 241
Query: 309 cttgtcttgaaaaaaacaaaaacaaaaaa 337
| ||||| |||||||||| |||||||
Sbjct: 242 cctgtctc---aaaaacaaaa-caaaaaa 266
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space: 604809
Effective search space used: 604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
