BAC Information

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BAC

Clone NameMSMg01-452C10
Chromosome12 (Build37)
Map Location 60,135,222 - 60,135,494
singlet/doubletsinglet
Overlap genenone
Upstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1
Downstream geneTrappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644, EG622488
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452C10.T7 (MSMg01no452_c10.b1)MSMg01-452C10.TJ (MSMg01no452_c10.g1)
ACCAG539471AG539472
length759744
length of high quality
(start - end)
272 (52 - 323)584 (82 - 665)
definitionCHROMAT_FILE: MSMg01no452_c10.b1 PHD_FILE: MSMg01no452_c10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:38 2005CHROMAT_FILE: MSMg01no452_c10.g1 PHD_FILE: MSMg01no452_c10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:22:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTTCTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGTTTTTACAAGGCTCATCATTAGTGTTTCATACGTAT
ATATCACATTTGCTTGGTGTTCTCATTCCTATATACTTACTGTTGGTTCT
TGTGAGAAATGTAGTAAACATGTCAATGACTGCTTCGGGGGCTTCACTTC
AATTTTTTTTGTTGTTGTTTTTGTTTTGGGGGGGTTTTGTTTGTTTGGGT
TTTTTTGTTTTGTTTTGTTTTCCGAGACAGGGTTTCTCTGTATAGCCCTG
GCTATCCTGGAACACGCTTTGTATACCAGGCTGGCCTCAAACTAAAAAAT
CTGCCTGCCTCTGCCTCCCCTGTGCTGGGATTAAAGACATATGTCACCAC
TCCCGGCTTTTCTCTTCTCTTCATGATAAATACCATTTATCCTAGCATCT
TGGTTAGTTACTTTTATAGACCTCCCCATACTTTCCTGACATGAGTCTAC
TAGGTAATCATTGAGCTAACTATATCTTCCAACTGATTATTTTTTACTTA
TACGTATGTATTATTACCTTGATAGAAATCCCATATATCGCTCCTAAGTT
ATTTACTTTGGTTATTACAATTATCGCGTTTCTTTGATGTTTAACAACAT
AATCTTCTTTTCTTGTCTCACTATTATTGTATCTATAAAACCCTCCTAAT
TATCTTCTCGTAAATTCATGATATAGGTCATTTTAATTCCAATTTTATAA
TTCTTTTGG
NNCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCACCTGTTTGATTGTG
TTCTCCTGTATTTATTTAAGATATTTATGTGTTTCCTCTTTGAGAGCTTC
TACTTGTTTACCTGTGTTCTCCCATATTTCTTTCTCTTTTTTAAAAAAAG
ATTTTAAATTTTATGTATATGAGTGCTCAATTTGCATGCATGCCTACATG
ACAGAAGAGGACATCTATATTCCATTATAAATGGTTGTATGTGACCATAT
GGTTGCTGGGAATTGAACTCATGATAACCAGTGCTCTTCACCACTGAGCC
ATCTCTCCAGCGCTCTCCTGTATTTCTTTAAGGGAGTTTTTTTATGTCCT
TCTTAAAGTTCTCTATTATCTTCATGAGATGAGAATTTATATCTGAATCT
TGCTTTTCTGTTGTGTTGGGGTATCCAGGGCTTGCTGTGGTGAGAGAACT
TGGTTCTGATGTTGTCAAGTGGAATTGGTTTCTATTGCTTATGTTCTTGC
TCTTGCCTCTCGCTATCTGTTATCTCTAGTGTTAACTGGTTTCTCTGTCT
CTGACTGGAGCCTGTCCCTCTCGTGAACCTGTGAGTCTGTGATCCTATGA
TTTTATGATCCTGGCTGTGTCAGAGCTCCTGGGGGTCATGCTGCCTCTGG
NTGGGGACTGAATGGTTGAAGTTCTAAACCCAAAAGAAATCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_c10.b1 MSMg01no452_c10.b1 CHROMAT_FILE:
MSMg01no452_c10.b1 PHD_FILE: MSMg01no452_c10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:38 2005
         (272 letters)



>mm_chr12_60135019_60135689
          Length = 671

 Score =  449 bits (232), Expect = e-130
 Identities = 262/274 (95%), Gaps = 6/274 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccagtttttacaaggctcatcattagtgtttcatacgtatatatcacatttgct 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtttttaaaaggctcatcattagtgtttcatacgtatatatcacatttgct 263

                                                                       
Query: 64  tggtgttctcattcctatatacttactgttggttcttgtgagaaatgtagtaaacatgtc 123
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtgttctcgttcctatatacttactgttggttcttgtgagaaatgtagtaaacatgtc 323

                                                                       
Query: 124 aatgactgcttcgggggcttcacttcaattttttttgttgttgtttttgttttggggggg 183
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 324 aatgactgcttcgggg-cttcacttcaattttttttgttgttgtttttgttttttggggg 382

                                                                       
Query: 184 ttttgtttgtttggg-tttttt----tgttttgttttgttttccgagacagggtttctct 238
           ||||||||||||||| ||||||    |||||||||||||||| | |||||||||||||||
Sbjct: 383 ttttgtttgtttggggttttttgttttgttttgttttgtttttcaagacagggtttctct 442

                                             
Query: 239 gtatagccctggctatcctggaacacgctttgta 272
           ||||||||||||||||||||||||||||||||||
Sbjct: 443 gtatagccctggctatcctggaacacgctttgta 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 671
Length adjustment: 9
Effective length of query: 263
Effective length of database: 662
Effective search space:   174106
Effective search space used:   174106
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)