Query= MSMg01no452_e13.b1 MSMg01no452_e13.b1 CHROMAT_FILE:
MSMg01no452_e13.b1 PHD_FILE: MSMg01no452_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:48 2005
(614 letters)
>mm_chr12_39383760_39384773
Length = 1014
Score = 1098 bits (568), Expect = 0.0
Identities = 610/642 (95%), Gaps = 28/642 (4%)
Strand = Plus / Plus
Query: 1 aaatgacccattaatgaaagctattcaagagatgaagtatattgaagataataagaatgt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 173 aaatgacccattaatgaaagctattcaagagacgaagtatattgaagataataagaatgt 232
Query: 61 aattccaggtccattcattgtcctctgtctttgtgatttcttgtgaaaatgaaatgtaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aattccaggtccattcattgtcctctgtctttgtgatttcttgtgaaaatgaaatgtaag 292
Query: 121 ctctatatttcaatactatttagcaaacatttgttgaatttctctaaatagtctacagta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctctatatttcaatactatttagcaaacatttgttgaatttctctaaatagtctacagta 352
Query: 181 tttctgaaaagatattgtctcaagagataactggattggttgagtgtatgccacacaagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tttctgaaaagatattgtctcaagagataactggattggttgagtgtatgccacacaagc 412
Query: 241 ctgaggaattgagtttacatccctagtatcagctttaagagctagagaaaataatgaata 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgagaaattgagtttacatccctagtatcagctttaagagctagagaaaataatgaata 472
Query: 301 gcatgggatgttgacctctgttctcacatatatcgatgtaaacccacatgaatatctgca 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 473 gcatgggatgttgacctctgttctcacatatatcgatgtaaacctacatgaatatctgca 532
Query: 361 tgtgtaaatgcatatacacatctgctatacatatacacagacatatattctcctctttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgtgtaaatgcatatacacatctgctatacatatacacagacatatattctcctctttta 592
Query: 421 tcacacacacacacacacacaca----------------------------ttaccaatg 452
||||||||||||||||||||||| |||||||||
Sbjct: 593 tcacacacacacacacacacacacacacacacacacacacacacacacacattaccaatg 652
Query: 453 cttccaagcatttcatatgaagaaattaagggcctgaagaaaaattaataatatagaagt 512
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 653 cttccaagcatttcatatgaagaaattaagggcctgaagaaaaattaataatatagaatt 712
Query: 513 gaaaatgtgtgaagataatgaaattttggcttaatttagcaacaatcaaaaacgttttta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gaaaatgtgtgaagataatgaaattttggcttaatttagcaacaatcaaaaacgttttta 772
Query: 573 accacatgtatctatgctacaatatgccaaatgctgaggtac 614
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 accacatgtatctatgctacaatatgccaaatgctgaggtac 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no452_e13.g1 MSMg01no452_e13.g1 CHROMAT_FILE:
MSMg01no452_e13.g1 PHD_FILE: MSMg01no452_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:22:48 2005
(559 letters)
>mm_chr12_39542622_39543580
Length = 959
Score = 1015 bits (525), Expect = 0.0
Identities = 552/563 (98%), Gaps = 4/563 (0%)
Strand = Plus / Minus
Query: 1 actaactgaagtcttcagaactagtgcaatatgacgaagtttagaggtcacctcacatat 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 926 actaactgaagtcttcagaactagtgcactatgacgaagtttagaggtcacctcacatat 867
Query: 61 atcagcatggtttggataaggcttcaaataaacccaggagtaagagacaaggtatatggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 atcagcatggtttggataaggcttcaaataaacccaggagtaagagacaaggtatatggc 807
Query: 121 ----agagagagagagagagagagagagagagagagagagagagagaacataatggcatt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agagagagagagagagagagagagagagagagagagagagagagagaacataatggcatt 747
Query: 177 ccaatctaatatacaatatacgcaagtctaaaaagaatttattattctgttactttagat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ccaatctaatatacaatatacgcaagtctaaaaagaatttattattctgttactttagat 687
Query: 237 attttgccttgactgttttcatatgtaccgcccccaaatgatcttttcgttactttgtaa 296
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 686 attttgccttgactgttttcatatgtaccgcccccaaatgatcttttcgttattttgtaa 627
Query: 297 ctcattgctactcacacaattccacttccttgtaacctactgaatccttgggtttgatta 356
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 626 ctcattgctacttacacaattccactttcttgtaacctactgaatccttgggtttgatta 567
Query: 357 gtaatttcacatatttttcttttcatctgtatgggggtaaaaagcctgcaatttgcatag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtaatttcacatatttttcttttcatctgtatgggggtaaaaagcctgcaatttgcatag 507
Query: 417 tcttaaattgaccattttagcaccaaaaataccatgtagggtaagtatggaacaggcctc 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tcttaaattgaccattttagcaccaaaaataccatgtagggtaagtatggaacaggcctc 447
Query: 477 atagggttgcggcacacctgccatatttctgtgtgcccctacaaaggacatgattgacat 536
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 446 atagagttgcggcacacctgccatatttccatgtgcccctacaaaggacatgattgacat 387
Query: 537 tcattcaaacactattagtcagt 559
|||||||||||||||||||||||
Sbjct: 386 tcattcaaacactattagtcagt 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
