BAC Information

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BAC

Clone NameMSMg01-452M06
Chromosome12 (Build37)
Map Location 21,130,888 - 21,309,576
singlet/doubletdoublet
Overlap geneDdef2, Itgb1bp1, Cpsf3
Upstream geneEG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257
Downstream geneIah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416, LOC668650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-452M06.T7 (MSMg01no452_m06.b1)MSMg01-452M06.TJ (MSMg01no452_m06.g1)
ACCAG539940AG539941
length760752
length of high quality
(start - end)		617 (48 - 664)576 (77 - 652)
definitionCHROMAT_FILE: MSMg01no452_m06.b1 PHD_FILE: MSMg01no452_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:25 2005CHROMAT_FILE: MSMg01no452_m06.g1 PHD_FILE: MSMg01no452_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,309,085 - 21,309,576)(21,130,888 - 21,131,463)
sequence
CACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCATACTTAACAATGGTGAAAGTTGTAACTGCAAGCTGTATATT
TTTTGGCATAGTAAAAATGTTTGATATAGAAACAAAAGACACCAACAAAA
GTCTTTCCTTTAAGCAAGTTTTCAGATCTCTGGGAGGGTCTGATCTATTT
TTATGGGTACTCCTTCCATTTCCAATTAAAAGCACCTAATTGTCTTCAGC
TTAAAACTCTTTCAATCCATGGAAATATCTGTTACTTTTACCAGCCTTAA
TTTATTCATTATTATCATCACCATCATGTGAGTGTACAGTGTGTGTGTGT
GCACGCACGCGAGCGCGAGTGCATTGCCTCAGCATGCACGTGGAAGTCAG
GGGCAGCTCTGCTCAGTTCTCCTTCTACCTCCACACATGTGCTGAAGGCT
GGCCTTGGGCTTTTGAGGCAAGCCCCTTTCCCCAGAGCTAGCTTACTGGC
TCATTACTATTGTTTTCATAATACTTAAAGATATAAACAAGAGCTGGGCA
GTGGTGGTGCACGCCTTTAATCCTAGCACTTGGGGGCAGAGACAGGCGGA
TTTCTGAGTTTGAGGCCAGCCTGGTCTACGGAGTGAGTTCCAGGACAGCC
AAGGCTATTCAGAGAAACCCTGTCTCGAAAAACCAAAAACCAACCAAACC
AAAAAACCAAATATACTAATACATAAAGAACTAACACAGTATGTGGTTAC
ATCTCTATCT

CCCCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAAGGTTATGTAGAG
AAAACTTTTCCCAAACAAGTCTGTCTCACCTTCATTATGTGGCCCTGGGG
ATTGACCTGAGGTGGTCAGCCAGGCACCTCTAGTGACTGAGGCATCTTTC
CAGCCCCGACTTTAGTATTAAAATAACTACTTTTTATATGTGGCTGAAAT
TGCTTCTATATAATTGGATTCATCTTCCTTCTCATTTGGTTTTTCTGTGT
ACTGAAAAACTGGGACGGCTCATAAGCCTGGAGTTTGGTTGCAAAGGAAA
ATAGCAGGGGCATCTCTGTCTGATTCTTAGGAGATACTCATTTGCTCGTG
GTGTTTGCAAGTCACCCCATTTCTGGTTCAGTGGGAGCCAGGGCTGAATG
CTCTCTGAAACATCCAATTCCATATCCCCTCTTGTCAACGGGTCTGTCCT
GCTGGGTTGTCTTTCCACGAGCATTTTCTTGACTTGGTCTCTCAGGGCAG
CCACTCTTCTTCACTGAGGTCGAGGTTGCTGGTCCTTGTCACACTACACT
CTCCTGTTTGTTCCTTTTTGGAAATGAACGATACTGGTTTTCTCCTGCCG
CAGTCAGGTTGTCAGGACCTTTAGCTTTCGTTTGCCTCCGCCAAAGCTTG
TCCAGGCCCTTCCGTGCCATTTGGAAGAGCTCAAAGTCTGCTGGATTTGT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no452_m06.b1 MSMg01no452_m06.b1 CHROMAT_FILE:
MSMg01no452_m06.b1 PHD_FILE: MSMg01no452_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:25 2005
         (617 letters)



>mm_chr12_21309085_21310101
          Length = 1017

 Score =  944 bits (488), Expect = 0.0
 Identities = 491/492 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccatacttaacaatggtgaaagttgtaactgcaagctgtatattttttggcatag 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaattccatacttaaaaatggtgaaagttgtaactgcaagctgtatattttttggcatag 433

                                                                       
Query: 65  taaaaatgtttgatatagaaacaaaagacaccaacaaaagtctttcctttaagcaagttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 taaaaatgtttgatatagaaacaaaagacaccaacaaaagtctttcctttaagcaagttt 373

                                                                       
Query: 125 tcagatctctgggagggtctgatctatttttatgggtactccttccatttccaattaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tcagatctctgggagggtctgatctatttttatgggtactccttccatttccaattaaaa 313

                                                                       
Query: 185 gcacctaattgtcttcagcttaaaactctttcaatccatggaaatatctgttacttttac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gcacctaattgtcttcagcttaaaactctttcaatccatggaaatatctgttacttttac 253

                                                                       
Query: 245 cagccttaatttattcattattatcatcaccatcatgtgagtgtacagtgtgtgtgtgtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagccttaatttattcattattatcatcaccatcatgtgagtgtacagtgtgtgtgtgtg 193

                                                                       
Query: 305 cacgcacgcgagcgcgagtgcattgcctcagcatgcacgtggaagtcaggggcagctctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cacgcacgcgagcgcgagtgcattgcctcagcatgcacgtggaagtcaggggcagctctg 133

                                                                       
Query: 365 ctcagttctccttctacctccacacatgtgctgaaggctggccttgggcttttgaggcaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ctcagttctccttctacctccacacatgtgctgaaggctggccttgggcttttgaggcaa 73

                                                                       
Query: 425 gcccctttccccagagctagcttactggctcattactattgttttcataatacttaaaga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 72  gcccctttccccagagctagcttactggctcattactattgttttcataatacttaaaga 13

                       
Query: 485 tataaacaagag 496
           ||||||||||||
Sbjct: 12  tataaacaagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no452_m06.g1 MSMg01no452_m06.g1 CHROMAT_FILE:
MSMg01no452_m06.g1 PHD_FILE: MSMg01no452_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:25 2005
         (576 letters)



>mm_chr12_21130688_21131663
          Length = 976

 Score = 1106 bits (572), Expect = 0.0
 Identities = 575/576 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggacagccaaggttatgtagagaaaacttttcccaaacaagtctgtctcaccttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggacagccaaggttatgtagagaaaacttttcccaaacaagtctgtctcaccttcatt 260

                                                                       
Query: 61  atgtggccctggggattgacctgaggtggtcagccaggcacctctagtgactgaggcatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtggccctggggattgacctgaggtggtcagccaggcacctctagtgactgaggcatc 320

                                                                       
Query: 121 tttccagccccgactttagtattaaaataactactttttatatgtggctgaaattgcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttccagccccgactttagtattaaaataactactttttatatgtggctgaaattgcttc 380

                                                                       
Query: 181 tatataattggattcatcttccttctcatttggtttttctgtgtactgaaaaactgggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatataattggattcatcttccttctcatttggtttttctgtgtactgaaaaactgggac 440

                                                                       
Query: 241 ggctcataagcctggagtttggttgcaaaggaaaatagcaggggcatctctgtctgattc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctcagaagcctggagtttggttgcaaaggaaaatagcaggggcatctctgtctgattc 500

                                                                       
Query: 301 ttaggagatactcatttgctcgtggtgtttgcaagtcaccccatttctggttcagtggga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttaggagatactcatttgctcgtggtgtttgcaagtcaccccatttctggttcagtggga 560

                                                                       
Query: 361 gccagggctgaatgctctctgaaacatccaattccatatcccctcttgtcaacgggtctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccagggctgaatgctctctgaaacatccaattccatatcccctcttgtcaacgggtctg 620

                                                                       
Query: 421 tcctgctgggttgtctttccacgagcattttcttgacttggtctctcagggcagccactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctgctgggttgtctttccacgagcattttcttgacttggtctctcagggcagccactc 680

                                                                       
Query: 481 ttcttcactgaggtcgaggttgctggtccttgtcacactacactctcctgtttgttcctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcttcactgaggtcgaggttgctggtccttgtcacactacactctcctgtttgttcctt 740

                                               
Query: 541 tttggaaatgaacgatactggttttctcctgccgca 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 tttggaaatgaacgatactggttttctcctgccgca 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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