BAC Information

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BAC

Clone NameMSMg01-453F20
Chromosome12 (Build37)
Map Location 85,613,283 - 85,613,833
singlet/doubletsinglet
Overlap genenone
Upstream geneDpf3, Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676
Downstream geneZadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2, Dlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F20.T7 (MSMg01no453_f20.b1)MSMg01-453F20.TJ (MSMg01no453_f20.g1)
ACCAG540395AG540396
length7841,368
length of high quality
(start - end)		636 (46 - 681)---
definitionCHROMAT_FILE: MSMg01no453_f20.b1 PHD_FILE: MSMg01no453_f20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:13 2005CHROMAT_FILE: MSMg01no453_f20.g1 PHD_FILE: MSMg01no453_f20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTGTCTCTACTTCCCAGAGTTCTGGGATTAAAGGCATTCAAC
CCTTTAATTCACCACAACTGGTTAGTTTGCATTCCCTGTAGATGTCAAAG
ACTACTGCTCACACAGGCTCTAAAAAAAATGAATGAGATACAATCTCTAG
ACTCACACCAGTAGTGAGAGAATACATGCAAAGAATTGTTAAACAGGGCA
AGAGCAACCTTCTATAGGTAAAGGGGGCAAAAATGCTGGTAATCGAGCTG
ACACGAGGGGAAAGTAGCACTGTTTTATGTTACCATAGCAACACCATTCA
CCATACAGCAGAAATGCTCTCAGGTCTCTGTTCCATATGGTCCAGAGGAT
GATCTAGATAGAGCCTATGGCTTGTGACCCCTTTGGGGGGGGGTGTCAAA
TATCAGGTATCTTGCATATCAGATATTTTTATTACAATTCATAAACAGTG
GTAAAGTTACAGTTATGAAGTAGCAACCAAATTAATTCTATGGTTCGGGG
TCACCACAGCATGAGGAACTGTAAAGGGTTGCAGCATTAAGAAGGTGAGA
ACTGCCGGGCGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCAGGTCTAC
AGAATGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGGA
AAACCAAAAAAAAAAAAGAAGGTGAGAACCACTAGTCTAGAGGATGATTT
ATCACAGACATGCTCCAAAGGATTATCTATAATA

ACACACCTCCTATTGTTAGTCGCACACTCGTATTATAGACAGGGCGTCAT
ATTCTTCTTTGCTTTGCTTATACTTTGGTAGGAGGAACGAGAGGGAGCGT
TCCTCGTTGTGAGTGGCGTATATATGCATCCTGTTGTACATACCCACACC
TATCTCTTATATAAATCACACTCCGGCCACTGCACACGCCACACCGATAA
TCACGCTGACTACTATTAGTCTCGCCACCATACACGCGAACAACGTGTAT
TAACATAGATTCTAGCCGCGAACTTACGATGCTGTTCGTTCTTGTACTGT
CTCTATATCCTGATTCATACGCGGACCTGGTAATCGTCGAGTTTATGCGG
ATCGTTCTTACAAACGCGAACGTAATGCTTGCTATCCATTCGTGCCGTTC
ATGCGCATTGAAACTAATACCCGCCACCGCCGCTCTTATATATCCTCTCT
TGTCACTGCCCTAGACATCATATTTTTTGTGTTGTTTCACCACGGTATTA
ATACAATAATATCTAGACTGATACATGTGCCCCACAATATCTGCCGAGGG
TCGAGTACTTCGACTGAGGCGGCAACCACTGCGGACTATATTATGTGCGT
AGTCGTTTACGAGCGACACCGCGTGTTCTTGCCCGTATATGATAATTACT
ACACGCCCGTCGAGCACCGCGGTATCTACGCGCGGATATATCATGTAATA
AGTCTACTTGTTAATCGCGTGCGCGTGCCTCGCCGTNTTACTTGTACGTG
AATATTAATGTGACTGACAACTCGATCGCGTGTGCGTCTTCGATACGGCG
CGTTATACTCTACGATCCTCTTACTGGGAGCGCCGTGGTATCTCGCTGCC
TACAGCTCCTTATTGCGTCCTATGTGGTATATTCACAATCATGTATCGGG
CGGCTGTACGTGACGACGTGTCTCTCCTCTCATGTANATGAACGTCGCAT
CAACTCGAAATGATCGACACGTATCGAGGTATGCGTCACTTCTCATTACA
TTCTGCTTGTATGTATAGACGTGGTCGGGCAGACCCCGACCATCGAGATG
ATGGCTGATTCAACTCTACTAGTTCGCACGTGATGGCGCGCCTGCCGTAT
ACTAGCCGAGCATCGTCGGCGCAGCGCGCGAGTNGTACTTGTACTATTCC
GTCTACCAGCAACGCTCTTCTTTTCGCTACTCTCTGTAAGCGAGTTCTAC
ACCGGGCCTGTACCGCCATTAGAGCGTATACGCTGTTAACGTAGTTAATC
TACATGTGCCCCGAGCGCCGCACTGATGTCGAGTGTCTGAGTTACGAGAT
ACTGTGTAANCTCGATGTTGCTTACGGACGCCTCTGACGCCGTACCAACC
ATCGAATCGCACGATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f20.b1 MSMg01no453_f20.b1 CHROMAT_FILE:
MSMg01no453_f20.b1 PHD_FILE: MSMg01no453_f20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:13 2005
         (636 letters)



>mm_chr12_85613078_85614113
          Length = 1036

 Score = 1023 bits (529), Expect = 0.0
 Identities = 547/553 (98%), Gaps = 2/553 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctctgtctctacttcccagagttctgggattaaaggcattcaaccctttaatt 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 206 gaattctctctgtctctacttcccagagttctgg-attaaaggcattcaaccctttaatt 264

                                                                       
Query: 65  caccacaactggttagtttgcattccctgtagatgtcaaagactactgctcacacaggct 124
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 caccacaaccggttagtttgcattccctgtagatgtcaaagactactgctcagacaggct 324

                                                                       
Query: 125 ctaaaaaaaatgaatgagatacaatctctagactcacaccagtagtgagagaatacatgc 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctaaaaataatgaatgagatacaatctctagactcacaccagtagtgagagaatacatgc 384

                                                                       
Query: 185 aaagaattgttaaacagggcaagagcaaccttctataggtaaagggggcaaaaatgctgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagaattgttaaacagggcaagagcaaccttctataggtaaagggggcaaaaatgctgg 444

                                                                       
Query: 245 taatcgagctgacacgaggggaaagtagcactgttttatgttaccatagcaacaccattc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 taatcgagctgacacgaggggaaagtagcactgttttatgttaccatagcaacaccattc 504

                                                                       
Query: 305 accatacagcagaaatgctctcaggtctctgttccatatggtccagaggatgatctagat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 accatacagcagaaatgctctcaggtctctgttccatatggtccagaggatgatctagat 564

                                                                       
Query: 365 agagcctatggcttgtgacccctttgggggggggtgtcaaatatcaggtatcttgcatat 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 agagcctatggcttgtgacccctttgggggggg-tgtcaaatatcaggtatcttgcatat 623

                                                                       
Query: 425 cagatatttttattacaattcataaacagtggtaaagttacagttatgaagtagcaacca 484
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagatattcttattacaattcataaacagtggtaaagttacagttatgaagtagcaacca 683

                                                                       
Query: 485 aattaattctatggttcggggtcaccacagcatgaggaactgtaaagggttgcagcatta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aattaattctatggttcggggtcaccacagcatgaggaactgtaaagggttgcagcatta 743

                        
Query: 545 agaaggtgagaac 557
           |||||||||||||
Sbjct: 744 agaaggtgagaac 756


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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