BAC Information

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BAC

Clone NameMSMg01-453G10
Chromosome12 (Build37)
Map Location 115,642,705 - 115,643,325
singlet/doubletsinglet
Overlap geneIgh
Upstream geneIgh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3
Downstream geneEG628398, EG639510, Ighv6-6, EG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544
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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453G10.T7 (MSMg01no453_g10.b1)MSMg01-453G10.TJ (MSMg01no453_g10.g1)
ACCAG540422AG540423
length749746
length of high quality
(start - end)
677 (73 - 749)621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no453_g10.b1 PHD_FILE: MSMg01no453_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:16 2005CHROMAT_FILE: MSMg01no453_g10.g1 PHD_FILE: MSMg01no453_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGTTCCATAGCGAATGGCTGAGAAGCACCTGAAAAA
TATTCAACATCCTTAATCATCAGAGAAATGCAAATCAAAACAACCCTGAG
ATTCCATCTCACACCAGTCAGAATGGATAAGATCAAAAATATAGGTGACA
GCAGATGCTGGTGAGGATGTGGAGAAAAAGGAACACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAAAAAAATGTGGTACATTTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAAATTATGAAATTCCTAGG
CAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACAATGAC
AAAATCTCTTCTAAACATCACTTGGAAATAAAGATGCCTATTGCCAATGA
GCGGAGGCAGGAAATAGGAGATGGGACATCCAGGAGAGGGAATTATGAGA
AAGACTTAGGCAAGGGAGATTTTACTCAGAACACTGAGGAGTCAGGCAN
NCCACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGAAGGAGTCCTAGCATCAT
AAATATATATTTTATGAGAGAGATTCTCATACATATCATTATTTAAGAAA
AATAATTGTTCTTTACACAGAATGATAAAGTGACTAGAAAATAATGGATT
CTTATTTTTCCATAGGAATAGCTCAAATATTCTAGTTTTAATGATAAATG
TCCCCAACACAGTCATATATTTGAAAATTTGATAGCTTATTGGTAATGTT
GTTTCTGGGGGTTATGAAACTTTTTGTGAATGGAGCCTCACTGGATTAAG
AACATCAAAATATTTGCACTTTATATTCTTCCCAACTTTCAGTTTACTCT
CTTATCTTCCTTGGTCATAAAAAGTGATCTTCTGTGAAATGTAATATCTT
GAGTTCTTTGTATATAATGGATATTTGCCCTCTAACAGTTGTGGGGTTGG
TAAAGATCTTTTTCTAATATGGTGGTTTCCCTTCTGTCCCATTAATAGTG
TCCTTTGCCTTAGAAAAGCTTTGCAATTTTATGCATTCAAATTTGTCCAT
TCTTTATCTTAGAGCATAGGCCGTTGGTGCATAACCCTATTAAAGATGGC
ATACAGATTTAAAAAAGAACTCTCAACTGGAGAATACTGGATGGCTGAGA
AGCACCCTAAAATATTCAACAACTATATACAAGAGTCATCAGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_g10.g1 MSMg01no453_g10.g1 CHROMAT_FILE:
MSMg01no453_g10.g1 PHD_FILE: MSMg01no453_g10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:16 2005
         (621 letters)



>mm_chr12_115642505_115643525
          Length = 1021

 Score = 1201 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatgaaggagtcctagcatcataaatatatattttatgagagagattctcatacatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatgaaggagtcctagcatcataaatatatattttatgagagagattctcatacatat 260

                                                                       
Query: 61  cattatttaagaaaaataattgttctttacacagaatgataaagtgactagaaaataatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattatttaagaaaaataattgttctttacacagaatgataaagtgactagaaaataatg 320

                                                                       
Query: 121 gattcttatttttccataggaatagctcaaatattctagttttaatgataaatgtcccca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattcttatttttccataggaatagctcaaatattctagttttaatgataaatgtcccca 380

                                                                       
Query: 181 acacagtcatatatttgaaaatttgatagcttattggtaatgttgtttctgggggttatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacagtcatatatttgaaaatttgatagcttattggtaatgttgtttctgggggttatg 440

                                                                       
Query: 241 aaactttttgtgaatggagcctcactggattaagaacatcaaaatatttgcactttatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactttttgtgaatggagcctcactggattaagaacatcaaaatatttgcactttatat 500

                                                                       
Query: 301 tcttcccaactttcagtttactctcttatcttccttggtcataaaaagtgatcttctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcttcccaactttcagtttactctcttatcttccttggtcataaaaagtgatcttctgtg 560

                                                                       
Query: 361 aaatgtaatatcttgagttctttgtatataatggatatttgccctctaacagttgtgggg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgtaatatcttgagttctttgtatataatggatatttgccctctaacagttgtgggg 620

                                                                       
Query: 421 ttggtaaagatctttttctaatatggtggtttcccttctgtcccattaatagtgtccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttggtaaagatctttttctaatatggtggtttcccttctgtcccattaatagtgtccttt 680

                                                                       
Query: 481 gccttagaaaagctttgcaattttatgcattcaaatttgtccattctttatcttagagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccttagaaaagctttgcaattttatgcattcaaatttgtccattctttatcttagagca 740

                                                                       
Query: 541 taggccgttggtgcataaccctattaaagatggcatacagatttaaaaaagaactctcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taggccgttggtgcataaccctattaaagatggcatacagatttaaaaaagaactctcaa 800

                                
Query: 601 ctggagaatactggatggctg 621
           |||||||||||||||||||||
Sbjct: 801 ctggagaatactggatggctg 821


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)