Query= MSMg01no454_f18.b1 MSMg01no454_f18.b1 CHROMAT_FILE:
MSMg01no454_f18.b1 PHD_FILE: MSMg01no454_f18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:31 2005
(493 letters)
>mm_chr12_28652639_28653531
Length = 893
Score = 843 bits (436), Expect = 0.0
Identities = 445/448 (99%)
Strand = Plus / Minus
Query: 1 cattggtgtggaaaacagtcaagaaatgagagggggggcattccaaggtttcaaaatcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 cattggtgtggaaaacagtcaagaaatgagagggggggcattccaaggtttcaaaatcac 389
Query: 61 attgagatttaagttcctaataaaagataataattatcactctctaaaatgtttgctgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attgagatttaagttcctaataaaagataataattatcactctctaaaatgtttgctgct 329
Query: 121 ggcacaaatggaggactgcattgtggatttgtcttttgataaattaatctatctagtttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggcacaaatggaggactgcattgtggatttgtcttttgataaattaatctatctagtttt 269
Query: 181 actaactttttttaaatttcttttctaaatttgcaggatgttgtatataacaatttattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actaactttttttaaatttcttttctaaatttgcaggatgttgtatataacaatttattt 209
Query: 241 ttttaagatttaacagcttctggtctgcaacaccacccaggacagatgagaactgcagct 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttttaagaaagaacagcttctggtctgcaacaccacccaggacagatgagaactgcagct 149
Query: 301 actcctttgcatatccagagacagcctgactcccaggacatctgtcataaccagagtcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 actcctttgcatatccagagacagcctgactcccaggacatctgtcataaccagagtcat 89
Query: 361 gggtaagacaccacacactacaatacctgccctagctgggacccccatgaagtccaacaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 gggtaagacaccacacactacaatacctgccctagctgggacccccatgaagtccaacaa 29
Query: 421 acacaggacctatctgctctgccagtga 448
||||||||||||||||||||||||||||
Sbjct: 28 acacaggacctatctgctctgccagtga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no454_f18.g1 MSMg01no454_f18.g1 CHROMAT_FILE:
MSMg01no454_f18.g1 PHD_FILE: MSMg01no454_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:31 2005
(485 letters)
>mm_chr12_28517200_28518084
Length = 885
Score = 903 bits (467), Expect = 0.0
Identities = 481/489 (98%), Gaps = 8/489 (1%)
Strand = Plus / Plus
Query: 1 cacactctgaacctttccagatgaccgtgtcctgtggggtatgttgcctgtgtgcagcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacactctgaacctttccagatgaccgtgtcctgtggggtatgttgcctgtgtgcagcac 260
Query: 61 ctcccctttgctgagaaagtttctcagacctgctttgttcacagtaggaggcactgggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccctttgctgagaaagtttctcagacctgctttgttcacagtaggaggcactgggag 320
Query: 121 ccatcagggcctctcttcccgcggatcccagtgctcaggagactcacacagaaaggcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatcagggcctctcttcccgcggatcccagtgctcaggagactcacacagaaaggcttc 380
Query: 181 attgaggaaaatctaatctgagttgcttcaacctctgctaaccttccttccacatactaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgaggaaaatctaatctgagttgcttcaacctctgctaaccttccttccacatactaa 440
Query: 241 gata----ttttgaacatgggtccttaaaaatattctacacttacatttcttaataacat 296
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ga-agccct---gaacatgggtccttaaaaatattctacacttacatttcttaataacat 496
Query: 297 atattctggcaaagtcatgtatgtctattttctctgttcaaatactgttcttctctgacc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atattctggcaaagtcatgtatgtctattttctctgttcaaatactgttcttctctgacc 556
Query: 357 aaacccagagctggctgtgttggtcattagccagcaatagatatagggcacctgagcgag 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaacccagagctggctgtgttggtcattagccagcaatagatatagggcacctgagcgag 616
Query: 417 tctccatccagtgatattttatctttgtaaggaaatgtgtgagcaaatgaatgtgaaact 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctccatccagtgatattttatctttgtaaggaaatgtgtgagcaaatgaatgtgaaact 676
Query: 477 aattatgga 485
|||||||||
Sbjct: 677 aattatgga 685
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
