Query= MSMg01no454_n07.b1 MSMg01no454_n07.b1 CHROMAT_FILE:
MSMg01no454_n07.b1 PHD_FILE: MSMg01no454_n07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:09 2005
(241 letters)
>mm_chr12_54886923_54887563
Length = 641
Score = 458 bits (237), Expect = e-133
Identities = 240/241 (99%)
Strand = Plus / Plus
Query: 1 acatctccagggggcccggcttgagagccgattagggcgagagtggaatgagttgttggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatctccagggggcccggcttgagagccgattagggcgagagtggaatgagttgttggg 260
Query: 61 actgtgctgctgcacgcacatgagctcccgcacaccatcctgctacattttccatgtctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 actgtgctgctgcacgcacatgagctcccgcacaccatcctgctacattttccgtgtctg 320
Query: 121 cattcttctctgctgcctccactgagaaatgctcctaaccgaactggtgagggctacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattcttctctgctgcctccactgagaaatgctcctaaccgaactggtgagggctacagg 380
Query: 181 gcagcttgaaggtatgcagaggcaacctacactatgggaatcatgtctggcccagggatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagcttgaaggtatgcagaggcaacctacactatgggaatcatgtctggcccagggatc 440
Query: 241 t 241
|
Sbjct: 441 t 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space: 146624
Effective search space used: 146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no454_n07.g1 MSMg01no454_n07.g1 CHROMAT_FILE:
MSMg01no454_n07.g1 PHD_FILE: MSMg01no454_n07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:09 2005
(394 letters)
>mm_chr12_55014934_55015729
Length = 796
Score = 717 bits (371), Expect = 0.0
Identities = 386/391 (98%), Gaps = 2/391 (0%)
Strand = Plus / Minus
Query: 1 attctctctgtctgcctctgttac-aagtttaaaacatgtagcatctacagttttatatg 59
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 591 attctctctgtctgcctctgttacaaagtttaaaacatgtagcatctacagttttatatg 532
Query: 60 tgtacagaaaaggtcaacaaacattattttgcattgcggtgacttggtgaaatgctggac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tgtacagaaaaggtcaacaaacattattttgcattgcggtgacttggtgaaatgctggac 472
Query: 120 tgtttcttgttggaatatttgtagtttttccattttgggagagccggagtttcgtatgta 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 471 tgtttcttgttggaatatttgtagtttttccgttttgggagagccggagtttcgtatgta 412
Query: 180 tcctgtattatttctgtggaggaacatccatctttccacgcatcctttagattttgtagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcctgtattatttctgtggaggaacatccatctttccacgcatcctttagattttgtagg 352
Query: 240 tgttttttttgtgctctgtaggtctttgcaactgctcactgaataaatgaaccaactacc 299
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tgttggttttgtgctctgtaggtctttgcaactgctcactgaataaatgaaccaactacc 292
Query: 300 atctctgattaaaagattattttttaattatact-aaaaacagtttgaaataaattggtg 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 291 atctctgattaaaagattattttttaattatactaaaaaacagtttgaaataaattggtg 232
Query: 359 ttagcatattttatatgctttttaccccccc 389
|||||||||||||||||||||||||||||||
Sbjct: 231 ttagcatattttatatgctttttaccccccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 796
Length adjustment: 9
Effective length of query: 385
Effective length of database: 787
Effective search space: 302995
Effective search space used: 302995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
