BAC Information

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BAC

Clone NameMSMg01-455B04
Chromosome12 (Build37)
Map Location 30,356,681 - 30,519,259
singlet/doubletdoublet
Overlap geneMyt1l
Upstream geneAdi1, Ttc15, Tssc1, 4833405L11Rik, LOC629608, LOC100043496
Downstream genePxdn, Tpo, Sntg2, Tmem18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455B04.T7 (MSMg01no455_b04.b1)MSMg01-455B04.TJ (MSMg01no455_b04.g1)
ACCAG541699AG541700
length733742
length of high quality
(start - end)
598 (65 - 662)576 (76 - 651)
definitionCHROMAT_FILE: MSMg01no455_b04.b1 PHD_FILE: MSMg01no455_b04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:29 2005CHROMAT_FILE: MSMg01no455_b04.g1 PHD_FILE: MSMg01no455_b04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,518,710 - 30,519,259)(30,356,681 - 30,357,256)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCTTTCCGGAAATGGATGGGAAGCCAGCCCAGAAAACCAAACAAGG
CTACTATGGAGTACTCTACTTACTATTATCTTTACACTTTACAGTATTAT
GAAGAACTACTCACGAGAAAGCAGTTAGAGTTCCTCTGTACCTCCATGCC
GGCTATACCCTTCATGAGACATGTTCTCATCTAGACCAGGCTAATGTCAA
ACTCAGCCCTCCTGCTTCTACTTCCCAGGTTCTGGGATTATAGGAATGCA
CCATGCCTGCCTTTAGAAATGCTTTGCTTCAGACAGTTTGTAAGACCAGG
TCTTACCTGAGCTACACTTACTGCCTGCTAAGGTGGGTCTGAATGTGACC
AACCAGGGCAAGCCTATTCAGTTTCTAGTTCAATAGAGCAAAACCCATAC
TTGAACCACATCTAGATACTTCCTGTGAAAATAGAGTCAAGGAGAATTCT
TATCCATTGAGAAGGATTGATCTTGAAGGCAAAACCCCTATACCCTGGAA
AAAAAAATCCCATAAAGAAACCCTCCTATAGCATTAGCTGTCAGCCTTGG
TGCCTTATTTTGTACTGAGAACCTGCAGCATGCCTGATGCTAAGAAGCAG
GTTACAACTGAAATGGTGACACCAGGCCAGGTTTCCGATTGATGATGGCT
TTGGGAATTGGCATGGATTTACAGCTGTGTTCC
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCCCAAGAAAAACCTCTAAACTTA
CTTAATATGTAAGACTGAAGGGTGTATGTGACTCCAGTTGTGAACTCTGT
AAATGACAGATAGCATCATGCCATAATGAAATGTAAGATACTTAGACATA
CCTTGTAATGAAGAAAACATTCTAGGAATACAGCTGGGTCTCCAGTTCTG
AGTCATGAACCCTGATTGCCTTTGTATACTCTGGTGGTCTTCCCAGAGAC
CCTCAGCTCAAGCAGAACAATTGCTCTGCTCTGCCATGCCAACCCCAGAT
CTTATACCCATGCAGCAAGACACTGTCCTCAACTGGCTCCGTACGCCTCC
TTATACAGCAGCAAAAGACAAAAGCACACACCCCTGTGGGAACAAGAATG
AATGTGCCTGTGCCGACCCAGACGCCAGCGAGGAGGCTCACGAGTCCAAC
GTTTGACCTTTGGCATGGGTGAGGCAAGGGTGATTTCTTTGGCTGCTGAG
GAATATCTAGGCAGTAAAAAATTATATGGATTTGCTGAAATTGAGGGTTT
CATAATCAAAAATGAATATATATAGAGAGAGAACATATTGATTTTAAACC
AACCAAGCAATTTGGGTTATGCCAGGCCCCTTTTGATTGACTTACTCCTT
GCTTCTGGGGAGGGTGGGTGTGTGTAAACTATTTTTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_b04.b1 MSMg01no455_b04.b1 CHROMAT_FILE:
MSMg01no455_b04.b1 PHD_FILE: MSMg01no455_b04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:29 2005
         (598 letters)



>mm_chr12_30518262_30519259
          Length = 998

 Score = 1064 bits (550), Expect = 0.0
 Identities = 550/550 (100%)
 Strand = Plus / Minus

                                                                       
Query: 49  actctacttactattatctttacactttacagtattatgaagaactactcacgagaaagc 108
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 actctacttactattatctttacactttacagtattatgaagaactactcacgagaaagc 939

                                                                       
Query: 109 agttagagttcctctgtacctccatgccggctatacccttcatgagacatgttctcatct 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 agttagagttcctctgtacctccatgccggctatacccttcatgagacatgttctcatct 879

                                                                       
Query: 169 agaccaggctaatgtcaaactcagccctcctgcttctacttcccaggttctgggattata 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 agaccaggctaatgtcaaactcagccctcctgcttctacttcccaggttctgggattata 819

                                                                       
Query: 229 ggaatgcaccatgcctgcctttagaaatgctttgcttcagacagtttgtaagaccaggtc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ggaatgcaccatgcctgcctttagaaatgctttgcttcagacagtttgtaagaccaggtc 759

                                                                       
Query: 289 ttacctgagctacacttactgcctgctaaggtgggtctgaatgtgaccaaccagggcaag 348
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ttacctgagctacacttactgcctgctaaggtgggtctgaatgtgaccaaccagggcaag 699

                                                                       
Query: 349 cctattcagtttctagttcaatagagcaaaacccatacttgaaccacatctagatacttc 408
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cctattcagtttctagttcaatagagcaaaacccatacttgaaccacatctagatacttc 639

                                                                       
Query: 409 ctgtgaaaatagagtcaaggagaattcttatccattgagaaggattgatcttgaaggcaa 468
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ctgtgaaaatagagtcaaggagaattcttatccattgagaaggattgatcttgaaggcaa 579

                                                                       
Query: 469 aacccctataccctggaaaaaaaaatcccataaagaaaccctcctatagcattagctgtc 528
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 aacccctataccctggaaaaaaaaatcccataaagaaaccctcctatagcattagctgtc 519

                                                                       
Query: 529 agccttggtgccttattttgtactgagaacctgcagcatgcctgatgctaagaagcaggt 588
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agccttggtgccttattttgtactgagaacctgcagcatgcctgatgctaagaagcaggt 459

                     
Query: 589 tacaactgaa 598
           ||||||||||
Sbjct: 458 tacaactgaa 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no455_b04.g1 MSMg01no455_b04.g1 CHROMAT_FILE:
MSMg01no455_b04.g1 PHD_FILE: MSMg01no455_b04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:29 2005
         (576 letters)



>mm_chr12_30356481_30357456
          Length = 976

 Score = 1114 bits (576), Expect = 0.0
 Identities = 576/576 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcccaagaaaaacctctaaacttacttaatatgtaagactgaagggtgtatgtgactcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcccaagaaaaacctctaaacttacttaatatgtaagactgaagggtgtatgtgactcc 260

                                                                       
Query: 61  agttgtgaactctgtaaatgacagatagcatcatgccataatgaaatgtaagatacttag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agttgtgaactctgtaaatgacagatagcatcatgccataatgaaatgtaagatacttag 320

                                                                       
Query: 121 acataccttgtaatgaagaaaacattctaggaatacagctgggtctccagttctgagtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acataccttgtaatgaagaaaacattctaggaatacagctgggtctccagttctgagtca 380

                                                                       
Query: 181 tgaaccctgattgcctttgtatactctggtggtcttcccagagaccctcagctcaagcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaccctgattgcctttgtatactctggtggtcttcccagagaccctcagctcaagcag 440

                                                                       
Query: 241 aacaattgctctgctctgccatgccaaccccagatcttatacccatgcagcaagacactg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacaattgctctgctctgccatgccaaccccagatcttatacccatgcagcaagacactg 500

                                                                       
Query: 301 tcctcaactggctccgtacgcctccttatacagcagcaaaagacaaaagcacacacccct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctcaactggctccgtacgcctccttatacagcagcaaaagacaaaagcacacacccct 560

                                                                       
Query: 361 gtgggaacaagaatgaatgtgcctgtgccgacccagacgccagcgaggaggctcacgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgggaacaagaatgaatgtgcctgtgccgacccagacgccagcgaggaggctcacgagt 620

                                                                       
Query: 421 ccaacgtttgacctttggcatgggtgaggcaagggtgatttctttggctgctgaggaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaacgtttgacctttggcatgggtgaggcaagggtgatttctttggctgctgaggaata 680

                                                                       
Query: 481 tctaggcagtaaaaaattatatggatttgctgaaattgagggtttcataatcaaaaatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctaggcagtaaaaaattatatggatttgctgaaattgagggtttcataatcaaaaatga 740

                                               
Query: 541 atatatatagagagagaacatattgattttaaacca 576
           ||||||||||||||||||||||||||||||||||||
Sbjct: 741 atatatatagagagagaacatattgattttaaacca 776


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)