BAC Information

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BAC

Clone NameMSMg01-455C03
Chromosome12 (Build37)
Map Location 60,905,745 - 60,906,112
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455C03.T7 (MSMg01no455_c03.b1)MSMg01-455C03.TJ (MSMg01no455_c03.g1)
ACCAG541745AG541746
length738742
length of high quality
(start - end)
635 (44 - 678)518 (73 - 590)
definitionCHROMAT_FILE: MSMg01no455_c03.b1 PHD_FILE: MSMg01no455_c03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:33 2005CHROMAT_FILE: MSMg01no455_c03.g1 PHD_FILE: MSMg01no455_c03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTATTTTTGCAGCTTTAAGGAATTGACCATAAAATCCATGCCACTTTG
AAATTCCAGTGACCTAAAATGAAAACTATTTCTTTTAGTTCAAAAGACAC
TTATTTATGAACTTTGAGGTCATTCAGACATTAATTTTCATGCTAGTTCA
TAGAATATATTGCTTTGTCTCCTTAAATAGTAATATTATCCAACTTTTGA
TGAAAAAAAACCTAAAAAAAACAAAAACCAGTGGATCATTAGTTAAATAA
GCATGGGTTTCTCTTGCCCTTTCAGCAGTTGGATTTAAAAACAAAAAACA
AAAAACAAAACAACAAAAAACAAGGACGAGAACAAAAGCAGTTTGAAAAG
CAGAATAGCAGAATACATATTCTGCCAGCACCTGACTAATACTGATGCAT
ATACTCACAGTCAACCATTGGTCTGAGTCTGTGGACTCCAATGGAAGAGT
TAGGAGAAGGACTGAAGGAGCTGAAGGGGATTGCAACCCTGTGGGAAGAA
CAACAATATCAACAATAGCAGTGTACATAGGCTTGCATAGGCAGGCATGG
TTCTATGGAATGCTTATGAGAACAAATTCTCAGATATGCTTCTCTGGGAA
GTGAAGATAGTACAAGACAATGAGAGGGCCTGTCAGACAGAAAGGTTTCT
TTCCTTTTGCTTTAAATAAGTTAGTTAGCTAATTAAAA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTAATTGTATCTCTATATCTGGAGTA
GTAAGGAAAAAAGAAGTTAATTTGACAACATTAAGAAAATAAACAATTGA
ATTTTGTCAAATGCTTTTCAGCATCTAATGAAATGATTGTGTGGGTTTTT
TTTTTCCTTTGAGATTGTTTATGTAGTGGATTTCGTTGATGGATTTCTGT
ATATTGACCATCCCTTCATCCCTGAAATAAAGTCTACTTGATCATGGTGA
ATGACTGCTTTGATGTGTTCTTGGATTCGGTGGACAAGAATTTTATTGAG
TATTTTTGCATCAATATTCATAAGGGAAGTTGGTCTGAAGTTCCCTTTCA
TTGTTGGATCTTTGTGTGGTTTAGGAATCAGCATAATTGTGGCTTCATAG
AACGAATTGGTTAGTGCTCCTTCTGTTTCTATTTTGTGGAATAGTTTGAA
GAGTATTGGTGTTAGGTCTTCTTTGAAGTTCTGATAGAATTCTGCACTGA
AACCATCTGGTCCTGGGCTTTTTTTTTTTTTTTTTTTTTTNTNNNNGGGC
TGGGAAACTTTTAATGATTGCTTCTAATTCTTTAGGGGTTATGGGACTGG
TTAAACTGGTTATCTGATCCTGATTTAACTTTGGCAAATGGGAACCGTTT
AAAAAAATGTCCATTTTCTCCAAAATTTCCAGTTGGGTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_c03.b1 MSMg01no455_c03.b1 CHROMAT_FILE:
MSMg01no455_c03.b1 PHD_FILE: MSMg01no455_c03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:33 2005
         (635 letters)



>mm_chr12_60905541_60906576
          Length = 1036

 Score =  665 bits (344), Expect = 0.0
 Identities = 362/368 (98%), Gaps = 1/368 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctatttttgcagctttaaggaattgaccataaaatccatgccactttgaaattcc 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctattttagtagctttaaggaattgaccataaaatccatgccactttgaaattcc 264

                                                                       
Query: 65  agtgacctaaaatgaaaactatttcttttagttcaaaagacacttatttatgaactttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtgacctaaaatgaaaactatttcttttagttcaaaagacacttatttatgaactttga 324

                                                                       
Query: 125 ggtcattcagacattaattttcatgctagttcatagaatatattgctttgtctccttaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtcattcagacattaattttcatgctagttcatagaatatattgctttgtctccttaaa 384

                                                                       
Query: 185 tagtaatattatccaacttttgatgaaaaaaaa-cctaaaaaaaacaaaaaccagtggat 243
           ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 385 tagtaatattatccaacttttgatgaaaaaaaaacctaaaaaaaccaaaaaccagtggat 444

                                                                       
Query: 244 cattagttaaataagcatgggtttctcttgccctttcagcagttggatttaaaaacaaaa 303
           |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 445 cattagttaaataagcatgggtttctattgcccttgcagcagttggatttaaaaacaaaa 504

                                                                       
Query: 304 aacaaaaaacaaaacaacaaaaaacaaggacgagaacaaaagcagtttgaaaagcagaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aacaaaaaacaaaacaacaaaaaacaaggacgagaacaaaagcagtttgaaaagcagaat 564

                   
Query: 364 agcagaat 371
           ||||||||
Sbjct: 565 agcagaat 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1036
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1026
Effective search space:   641250
Effective search space used:   641250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)