BAC Information

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BAC

Clone NameMSMg01-455F19
Chromosome12 (Build37)
Map Location 16,795,113 - 16,795,638
singlet/doubletsinglet
Overlap genenone
Upstream geneTrib2, LOC100043268, EG432636, LOC100043273, Lpin1, Ntsr2, Greb1
Downstream geneE2f6, Rock2, Pqlc3, 2410004P03Rik, EG668514, Kcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-455F19.T7 (MSMg01no455_f19.b1)MSMg01-455F19.TJ (MSMg01no455_f19.g1)
ACCAG541919AG541920
length704780
length of high quality
(start - end)		526 (67 - 592)86 (79 - 164)
definitionCHROMAT_FILE: MSMg01no455_f19.b1 PHD_FILE: MSMg01no455_f19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:51 2005CHROMAT_FILE: MSMg01no455_f19.g1 PHD_FILE: MSMg01no455_f19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTCTAAAATTTGGGGCCGCTAAACGACTCTCTTCCAGGAGAGGATCCG
CGGAATTCCATTTCCGCCAGGGCTATTCAGGGAGACTCTGACTCATAACT
ACAAAAGAACAACAAAGTGATCTGTGTTCTGACTGATGAGCAAGTACTGG
GTGTACTTTTTCTCTTAAGTCTTCTACCAACTGGGGGCCCCTCTGGGAGA
AAGCCTAAGAAGAACAGCAAACAGAAGCAGAGTGATGGCTGCTGCTGTGC
GATTGACATCTGAGCCAGAGACATGGGTAAGGTGAAGGAAACGCTGCTGC
CACTGTGAGCCATGATTTCAGGTGGGACGTGAGTGGGATGATCTGCAGGA
CTGTGGTCACGATCTTCAATCAGACAGTGTCTGGCTCGCTTGTACTGACT
GGCTGTACTGTGTTATGGTCACCTTACCTGCCCAGATCCTCAGAGGCCAG
AATTAGGTCCTGTCACCTGGGAACTCACCAGAGCCAATCCGAGGATTAGG
GTACTCCTGGAATTGGCCCAGGAACACATTCAGCTCAATTATTTGATACC
ATGTAGCTAACCATACTTTGATGTTGCATTTCTCCCTCCCTGTCAGGAGA
TCTTTGAATCTCTGCAGGGATGGTAGGGAGCTGACAGACAAAGAGATATC
GTGGGAGAGGAGAGCATTGGTGGGATTCCCGAGTGTGAAAGGCCTTATGC
AGCC

TTTCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTGATTTTTCTTTTATGTG
TGTGAGTGCTTGTGGGGCGGTGAGCTGTGCACAGACAGCCTGGTCCCGTG
TCGTCCCGCCCCTTCTCTTNTGTTTTTTTTTTTTTTTTTTTTTTTTTTCT
TTTTTTTCTTTTTTTTTCTCTTTTTTTTTTTTCTTTTCTTCCTCCTTTTT
TTTTTTTTCTTTCTTTTTCTTTTCTTTTTTTTGTTCTTGTGTTCTTTTTG
TTTCCCCGCCGTTTTTCCTGCTTTTCACCCTAGGCGCCGNCCGTTATTTT
TTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTCTCCTTTTTTTTTTTTTTTTTTTTCCCCCCACCTTTTTTTTTTTTTTT
TTCCTCTCTTTTTTTTTTTCTTTTTTTTTTTTTTTTTCCCTTTTTTTTCT
CTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTCCTTTTT
TTTTTTCCTTTTACTTTTTTTTTTTTTTTTTCTTCCTTTTTTTTTTTTCT
TTTTTTACTTTTTTTTTTTCTTTTTTCTTTTTTTTCCTTTTTTTTTTTTT
TTTTTTTTTTTCTTCCCTTTCCCTTCTTTTCTTTTTTTTTTTCTTGATCT
TTTTTCTTCTCTTTCTTCCTTCTATTTTTTTATTCTCTTCCCTCTCTCTT
TTCTTCTTTCTTTTTTTTTTTTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no455_f19.b1 MSMg01no455_f19.b1 CHROMAT_FILE:
MSMg01no455_f19.b1 PHD_FILE: MSMg01no455_f19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:51 2005
         (526 letters)



>mm_chr12_16794913_16795838
          Length = 926

 Score = 1017 bits (526), Expect = 0.0
 Identities = 526/526 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccagggctattcagggagactctgactcataactacaaaagaacaacaaagtgatctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ccagggctattcagggagactctgactcataactacaaaagaacaacaaagtgatctgtg 667

                                                                       
Query: 61  ttctgactgatgagcaagtactgggtgtactttttctcttaagtcttctaccaactgggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ttctgactgatgagcaagtactgggtgtactttttctcttaagtcttctaccaactgggg 607

                                                                       
Query: 121 gcccctctgggagaaagcctaagaagaacagcaaacagaagcagagtgatggctgctgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gcccctctgggagaaagcctaagaagaacagcaaacagaagcagagtgatggctgctgct 547

                                                                       
Query: 181 gtgcgattgacatctgagccagagacatgggtaaggtgaaggaaacgctgctgccactgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 gtgcgattgacatctgagccagagacatgggtaaggtgaaggaaacgctgctgccactgt 487

                                                                       
Query: 241 gagccatgatttcaggtgggacgtgagtgggatgatctgcaggactgtggtcacgatctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gagccatgatttcaggtgggacgtgagtgggatgatctgcaggactgtggtcacgatctt 427

                                                                       
Query: 301 caatcagacagtgtctggctcgcttgtactgactggctgtactgtgttatggtcacctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caatcagacagtgtctggctcgcttgtactgactggctgtactgtgttatggtcacctta 367

                                                                       
Query: 361 cctgcccagatcctcagaggccagaattaggtcctgtcacctgggaactcaccagagcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cctgcccagatcctcagaggccagaattaggtcctgtcacctgggaactcaccagagcca 307

                                                                       
Query: 421 atccgaggattagggtactcctggaattggcccaggaacacattcagctcaattatttga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atccgaggattagggtactcctggaattggcccaggaacacattcagctcaattatttga 247

                                                         
Query: 481 taccatgtagctaaccatactttgatgttgcatttctccctccctg 526
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taccatgtagctaaccatactttgatgttgcatttctccctccctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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